Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0539 ATGCCAATGGAGGCTTTCTCACTCACCGCAACCACCATTCCCTCCTCTTTGACACGTAGAGGGGCTACACACAAAACTTCAAGCCATGTCAACCTTTCCAGGCACTTGCATTTCATGTCTTTCCCCTCCTTCGCAAAGCACAAAATGCTTAGCACCAGAGCTCAAGCTTCAGGTTCAACAAAATGTAGTGCGGGTAAAGCTGAGGGGATCCCTGAGAAAACAGATGCCAAGGATGATGACTTAGTCTTTGTTGCTGGTGCTACTGGAAAAGTTGGTTCAAGAACAGTGAGGGAGCTTATAAAGCTTGGTTTTAGAGTCAGAGCTGGAGTGAGGAGTGCTCAGAGAGCCGGTGCATTAGTTCAGAGTGTTGAACGGTTGAAGCTTGATGCTACAAGTGGAGGCAGTCAAGCTGTAGAGAAGCTTGAAATTGTGGAATGTGATTTGGAGAAGCCAGGTCAAATTGGACCAGCATTAGGGAATGCATCAACAGTGATATGCAGCATCGGTGCCAGTGAAAAGGAAGTTTTCGACATCACTGGACCCTTTAGAATAGATTATCAGGCCACCAAAAACCTGATTGATGCAGCAACTGTTGCCAAGGTAAATCACTTCATATTGGTTACTTCATTGGGAACAAACAAAGTTGGCTTTCCTGCAGCTATTCTCAATTTGTTTTGGGGAGTCCTGATTTGGAAAAGGAAGGCAGAAGAAGCATTGCTAGCTAGTGGACTTCCATACACAATAGTGAGACCTGGAGGCATGGAGAGGCCTACTGATGCTTACAAGGAAACTCATAATATAACCCTGTCAAGAGAAGATACTTTATTTGGGGGTCAAGTGTCAAACCTTCAGATTGCTGAACTTATGGCAGTCATGGCCAAGAATCGTGATCTTTCGTATTGTAAAATAGTGGAGGTAATTGCAGAGACAACTGCACCTCTGACTCCCCTGGAGAAACTTCTTCCAAAGATACCTTCTCAACGCCCTTACGTTTATTCACCCAAGAAACCAGATATTGCAGCTGTCAATGAGCCAGAACCTTCTGCTAATGTTGTAGCAGCGGAACCTAGCATTGTCACTCAGGAAGAAACCACACAACCTAAACCAGTGGCAAAACAGCCACTTTCTCCTTATACTGCTTATGCTAATTTGAAGCCACCTTCATCTCCTTCTCCATCTAAGCCTAGTGGTGGGAAAATAGGAGAGATCAATGAAACAGTGGCAACACCTATTGCTCCTGATACTCCAAGTACCGAGCCGGTATTAGATGGTATTTCTCAGACAACATCCATCTCAGAAGTGAAGAAGTCCCTTTCTCCTTATGCAGCCTATGAGGATTTGAAGCCTCCCACCTCCCCAAGCCCAACACCAAGTAGCTCCAGTGATAAACCTCTTGCTGCCTCAACAGAAGTGGAATCGACAGGGGACAATGTTGCTGCCTCAACAGAAGTGGAATCTACAGGGGACAATGTTTCTGCTTCAACAGAAGTGGAATCTACAGGGAGCAATGTTGCTGCCCCAACCGAAGTGGAATCTACAGGGGACAATGTTGGTGCCTCAACTGAAGTGGAATCTACAGGGGACAATGTTGCTGCTTCAACAGAAGTGGAATCTACAGGGAGCAATGTTGCTGCCCCAACCGAAGTGGAATCTACAGGGGACAATGTTGCTGCCTCAACAACAGTGGAATCTACAGTGGGCAATGTTGATGAAAAGAATCCTTCCCAAGATTCAAATTCTTCTAATTCTCCCTATCCTGTATATTCTGACTTCAAGCCTCCCACTTCACCGTCTCCTAATGCACCCAATACATCAACCTCCAAATCTGCTGTGGATGTGGTGCCTGAGATGGATGCAGCATCAAGCAATGGACCAGCCCAGCTTTCAATAGCAGATGAATCAAAGGATGAGGAACATGCCCCAGAACCAAAGTCAAGACCACTTTCACCTTATACAATGTATGAGGACTTGAAGCCTCCAACATCACCAACGCCATCCTTCAGAAAATCTTAG 2013 0.457 MPMEAFSLTATTIPSSLTRRGATHKTSSHVNLSRHLHFMSFPSFAKHKMLSTRAQASGSTKCSAGKAEGIPEKTDAKDDDLVFVAGATGKVGSRTVRELIKLGFRVRAGVRSAQRAGALVQSVERLKLDATSGGSQAVEKLEIVECDLEKPGQIGPALGNASTVICSIGASEKEVFDITGPFRIDYQATKNLIDAATVAKVNHFILVTSLGTNKVGFPAAILNLFWGVLIWKRKAEEALLASGLPYTIVRPGGMERPTDAYKETHNITLSREDTLFGGQVSNLQIAELMAVMAKNRDLSYCKIVEVIAETTAPLTPLEKLLPKIPSQRPYVYSPKKPDIAAVNEPEPSANVVAAEPSIVTQEETTQPKPVAKQPLSPYTAYANLKPPSSPSPSKPSGGKIGEINETVATPIAPDTPSTEPVLDGISQTTSISEVKKSLSPYAAYEDLKPPTSPSPTPSSSSDKPLAASTEVESTGDNVAASTEVESTGDNVSASTEVESTGSNVAAPTEVESTGDNVGASTEVESTGDNVAASTEVESTGSNVAAPTEVESTGDNVAASTTVESTVGNVDEKNPSQDSNSSNSPYPVYSDFKPPTSPSPNAPNTSTSKSAVDVVPEMDAASSNGPAQLSIADESKDEEHAPEPKSRPLSPYTMYEDLKPPTSPTPSFRKS* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0539 670 Gene3D - 79 326 - -
Lja3g0539 670 CDD SDR_a5 82 310 - -
Lja3g0539 670 MobiDBLite consensus disorder prediction 409 428 - -
Lja3g0539 670 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 81 297 IPR036291 -
Lja3g0539 670 MobiDBLite consensus disorder prediction 458 589 - -
Lja3g0539 670 PANTHER PROTEIN TIC 62, CHLOROPLASTIC 6 669 IPR044719 -
Lja3g0539 670 Pfam NAD(P)H-binding 86 295 IPR016040 -
Lja3g0539 670 MobiDBLite consensus disorder prediction 442 670 - -
Lja3g0539 670 MobiDBLite consensus disorder prediction 379 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0539 Lja-Chr3 5383904 5389707 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0539 - - lja:Lj3g3v3338270.1 780.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0539 3 5383904 5389707 Lja3g0539 3 5383904 5389707 ECH