Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0538 ATGGCTTTCTGCACCAACATTCTCCGTCTTCCTACTGCTCGAAACGACATCGTTTTGCCGGAAAGTGTTACCAGAACACCGTGCCGGAAACTGTTCTCCGTCGTGCGATGCTCCTCCGCCGATCCCGATTTTGATGCCAAGGTGTTCCGGAAGAATCTCACCAGGAGTGCCAATTATAATCGCAAAGGGTTTGGTCACAAGGAGGAGACTCTCAAGCTCATGAATCGCGAGTACACTAGTGACATTATTAAGACTTTGAAGGAAAATGGGTATGAGTATACATGGGGTAATGTCACTGTGATGCTGGCTGAAGCATATGGCTTCTGTTGGGGAGTTGAGAGGGCTGTTCAGATTGCTTATGAGGCGAGAAAACAGTTTCCTGATGAGAAGATATGGCTTACCAATGAAATCATCCACAACCCAACTGTTAATAAGCGGCTCGAGGATATGCAAGTGCAGAATATTCCTTTGGAGGATGGGAAAAAACAATTTGATGTTGTCAACAAGGGTGACGTGGTCATGTTTCCTGCTTTTGGAGCAGGAGTGGATGAGATGTTGACATTGAGCGAGAAAAATGTTCAAATCGTTGATACTACTTGCCCCTGGGTTTCAAAGGTATGGAACACTGTTGAGAAGCACAAGAAAGGAGATTATACCTCGATTATTCATGGTAAATATGCCCATGAGGAAACCATAGCAACTGCATCTTTTGCTGCAAAGTATATTATTGTGAAGAATATGGCAGAGGCTGAATATGTTTGCGACTATATTCTTGGCGGTGAACTAAATGGATCCAGTTCAACCAAAGAAGCATTACTAGAGAAATTTAAGTTTGCAGTTTCTAAAGGCTTTGATCCAGACACTGACCTGGTAAAACTAGGCATTGCAAATCAGACAACAATGCTCAAGGGAGAGACTGAAGATATAGGTAAACTGGTGGAAAGGACGATGATGCGCAAATTTGGTGTGGAAAACGTCAATGAGCACTTTATAAGCTTCAACACAATTTGTGATGCTACTCAGGAGAGACAAGATGCTATGTACAAGCTGGTTGAGAGAGATATGGATCTTATGTTAGTAGTTGGTGGCTGGAACTCGAGCAACACATCGCACCTGCAAGAGATAGCTGAGGAACGCAGAATTCCTTCTTACTGGATTGACACTGAGCAGAGAATTGGTCCAGGAAACAGAATAGCATACAAGTTAATGCATGGTGAGCTGGTGGAGAAAGAAAACTTTCTGCCACAGGGTCCAATAACTATTGGTATAACATCTGGTGCATCAACACCAGACAAGGTTGTTGAAGACGTGCTTATCAAGGTGTTTGACTTGAAACGGGAAGAAGCATTGCAGCTCGCTTAA 1362 0.4347 MAFCTNILRLPTARNDIVLPESVTRTPCRKLFSVVRCSSADPDFDAKVFRKNLTRSANYNRKGFGHKEETLKLMNREYTSDIIKTLKENGYEYTWGNVTVMLAEAYGFCWGVERAVQIAYEARKQFPDEKIWLTNEIIHNPTVNKRLEDMQVQNIPLEDGKKQFDVVNKGDVVMFPAFGAGVDEMLTLSEKNVQIVDTTCPWVSKVWNTVEKHKKGDYTSIIHGKYAHEETIATASFAAKYIIVKNMAEAEYVCDYILGGELNGSSSTKEALLEKFKFAVSKGFDPDTDLVKLGIANQTTMLKGETEDIGKLVERTMMRKFGVENVNEHFISFNTICDATQERQDAMYKLVERDMDLMLVVGGWNSSNTSHLQEIAEERRIPSYWIDTEQRIGPGNRIAYKLMHGELVEKENFLPQGPITIGITSGASTPDKVVEDVLIKVFDLKREEALQLA* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0538 453 TIGRFAM ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 100 440 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Lja3g0538 453 CDD lytB_ispH 100 438 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Lja3g0538 453 PANTHER 4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE, CHLOROPLASTIC 38 451 - -
Lja3g0538 453 Gene3D - 334 452 - -
Lja3g0538 453 Hamap 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 98 445 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Lja3g0538 453 Gene3D - 200 333 - -
Lja3g0538 453 Gene3D - 109 199 - -
Lja3g0538 453 Pfam LytB protein 100 439 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0538 K03527 - gmx:100818067 785.023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0538 3 5379047 5382156 Lja3g0538 3 5379047 5382156 ECH