Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0537 ATGAAGGCTTTGAATCCAATAATCTCCTCAAACCCATGTCTTCCCAACACCCATTTCCTCAAAGTTCCTAACTATCATGTCTCCTTCAAATTCAAGCCATTCCCACACAACAACCATGGTGCAAAGAGAGCTCACACTTTCTCATTCACCACCATCAGCTGCAAGCTCAAAAGCTCTCAAGATATCAAAAACAAGGAGGGGAAGAGCGTGTCACAGAAGATTGTCTTGTCAGAAGCGTCTCCTCCACCGCTCACGGAGGATGATGGTGGCAGTGGAAATGGGAATGTTCCAGTGAGCTCAAAGAACAGAGGAGGCATTTTTTGGGTGGCTAAGAGGTTGAGCAGAAAGGTGCTGCAGATTCTGTCTAATTTGCCGTTGGCTATTGGGGAAATGTTCGTCATTGCTTTTCTAATGGGTTTAGGCACTTTTATTGATCAAGGTGAGTCCCCTGACCATTATTTCCAGAAGTACCCTGAAGATCATCCTGTGCTAGGATTTTTCACTTGGAGATGGGTTCTCGCTCTTGGTTTTGATCACATGTTTTCATCTCCTATATTTCTGGGGATGTTGGCTCTCTTGGGTGCATCCCTTATGGCCTGCACTTACACAACACAGATCCCACTAATCAAAGTTGCAAGAAGATGGTCATTTTTGCACTCTGCTGAGGCTATCCGTAAGCAGGAATTTTCAGAATCATTGCCGAGAGCATCAATCGAAGATGTTGGTACTCTATTAATGGGAGCTGGATATGAGGTATTCTTGAAAGGACCATCTTTGTATGCTTTTCGAGGGCTTGCAGGTCGGCTGGCCCCTGTTGGAGTCCATATAGCTATGATATTGATAATGGTTGGAGGAACATATAGTGCTTCTGGTAGCTTCAGAGGTTCAGTCAATGTGCCCCAAGGGCTGAATTTTGTTGTAGGAGATGTTCTCAGTCCTAGCGGTTTCCTCTCCACTCCTACCGAGGATTTTAATACAGAGGTTCATGTGAACAGATTCTACATGGATTATTATGATAGTGGAGAGGTTTCACAGTTCCACACAGATCTTTCCCTCTTAAACATGGATGGGAAAGAAGTAATGAGGAAAACAATTAGTGTGAATGATCCTTTGAGGTATGGTGGTGTCACCATATACCAGACAGATTGGAGCATTTCTGCTCTGCAAATACTTAAGGATAATAAAGGACCTTATAACTTGGCTATGGCACCTCTAAAGATCAATGGAGATAAGAAACTTTATGGTACTTTTCTACCTGTTGGAGATATTAACTCTCCTGATGTTAAGGGAATATCTATGCTTGCTCGTGATCTGCAGTCAATAGTCCTTTATGATAAGGAAGGAAAATTTGCAGGAGTTAGACGACCTAGTTCGAAGCTCCCAATCAACATTGATGGCTCAGAAATTATTGTTGTTGATGCAATAGGGAGTAGTGGCTTGGACTTAAAGACTGACCCAGGTGTTCCAATTGTATATGCTGGATTTGGTGCTCTAATGCTCACTACTTGCATCAGCTATTTATCTCATTCACAGATATGGGCCTTACAAGATGGGACAACCGTGGTTATCGGAGGGAAGACTAACAGAGCAAAGATGGAGTTTCCAGAGGAGATGAACCGCTTGCTTGATAAGGTCCCTGAATTAGTTAAATCATCCTTATCTAACCAAGGTGGCAGCATTAGTGGTTAG 1689 0.431 MKALNPIISSNPCLPNTHFLKVPNYHVSFKFKPFPHNNHGAKRAHTFSFTTISCKLKSSQDIKNKEGKSVSQKIVLSEASPPPLTEDDGGSGNGNVPVSSKNRGGIFWVAKRLSRKVLQILSNLPLAIGEMFVIAFLMGLGTFIDQGESPDHYFQKYPEDHPVLGFFTWRWVLALGFDHMFSSPIFLGMLALLGASLMACTYTTQIPLIKVARRWSFLHSAEAIRKQEFSESLPRASIEDVGTLLMGAGYEVFLKGPSLYAFRGLAGRLAPVGVHIAMILIMVGGTYSASGSFRGSVNVPQGLNFVVGDVLSPSGFLSTPTEDFNTEVHVNRFYMDYYDSGEVSQFHTDLSLLNMDGKEVMRKTISVNDPLRYGGVTIYQTDWSISALQILKDNKGPYNLAMAPLKINGDKKLYGTFLPVGDINSPDVKGISMLARDLQSIVLYDKEGKFAGVRRPSSKLPINIDGSEIIVVDAIGSSGLDLKTDPGVPIVYAGFGALMLTTCISYLSHSQIWALQDGTTVVIGGKTNRAKMEFPEEMNRLLDKVPELVKSSLSNQGGSISG* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0537 562 PANTHER CYTOCHROME C BIOGENESIS PROTEIN CCS1, CHLOROPLASTIC 81 552 IPR023494 -
Lja3g0537 562 Hamap Cytochrome c biogenesis protein Ccs1 [ccs1]. 114 543 IPR023494 -
Lja3g0537 562 Pfam ResB-like family 126 390 IPR007816 -
Lja3g0537 562 Pfam ResB-like family 426 538 IPR007816 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0537 Lja-Chr3 5374068 5378431 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0537 30 554 Miscellaneous Gene Families AT1G49380 69.811 0.0 764
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0537 K07399 - gmx:100807003 935.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0537 3 5374068 5378431 Lja3g0537 3 5374068 5378431 ECH