Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0536 ATGGACATTGATTTCAAAGAGTACCAGTTACGCTGTGAACTTCACGGCCACGAAGACGATGTTCGTGGAATTTGCGTCTGCGGCAACGACGGCATAGCGACATCGTCAAGGGACAAAACGGTTAGGTTCTGGTCACCGGAAAATCGCAAGTTTGTGTCGTCCAAGGTTCTGGTCGGGCATTCGAGCTTTGTGGGACCCTTGGTGTGGATCCCTCCGAACCCTGAGTTGCCGCAAGGTGGGGTTGCGTCTGGCGGCATGGACACTCTCGTGTTGGTGTGGGACTTGAGCACTGGTGAGAAGGCTCACACGCTCAAGGGTCATCAGTTGCAGGTTACTAGCATTGCGTTTGATGATGGGGATGTTGTTTCCGCTTCGGTTGATTGTACATTGAGACGGTGGAAGAACGGGCAATGTACAGAGACGTGGGAGGCTCACAAGGCTCCAGTCCAAGCTGTTATCAAGCTACCCACAGGCGAGCTTGTTACAGGTTCAAGTGATACTACTTTGAAGCTTTGGAGAGGAAAAACTTGTGTACATACTTTTGAAGGACATTCAGATACAGTTAGAGGCTTGGCTGTGATGTCTGGTCTTGGAATCCTGTCTGCATCCCATGATGGTTCTCTCAGATTATGGGCAGTCAGTGGTCAAGTGTTGATGGAGATGGTTGGCCATACTGCAATTGTTTATTCAGTTGATTCACATTCATCCGGACTTATTGTGAGTGGTAGCGAGGACCGTTTTGCAAAAATATGGAAAGATGGAGTTTGTGTTCAGAGCATAGAGCATCCTGGTTGTGTTTGGGATGCAAAATTTATGGAAAATGGAGATATCGTGACAGCATGTTCAGATGGAATTGTACGCATTTGGACCGTAAATCAAGATTATTTTGCTGACCAGCTAGAGCTTGATTTATACACTTCACAACTTTCTCAATACAAGTCTAGTAGAAAGAGGGTTGGAGGATTGAAATTGGAAGAGTTACCAGGGTTGGAGGCACTGAAGATCCCAGGAACTAGTGATGGCCAGACAAAAGTAGTCAGAGAAGGGGATAACGGGGTTGCATATGCATGGAACATGGCAGAACAGAAGTGGGATAAAATTGGTGAAGTTGTTGATGGACCAGAGGAATCAAATCGTCCTTTTATGGATGGCATTCAGTATGATTATGTGTTCGATGTTGATATTGGAGATGGTATGCCTATCCGTAAGTTGCCATACAACCGATCAGATAATCCATATGATGTTGCTGATAAATGGCTACTCAAGGAGAATCTTCCTCTTTCCTTCCTTGAACAAATTGTACAGTTCATACTTCAAAATACTGGACAGAAGGATATTACTTTTGATGCTTCCTTTCGTGACCCCTACACCGGCTCCAATGCTTACATACCAGGACAACCTTCCGGCATGTCTGATATTTCTGCAAAACCTACCTTCAAGCATATCCCTAAGAAAGGGATGCTTGTTTTTGATACAGCTCAGTTTGATGGGATCCTTAAAAAGATTACCGAGTTCAATAATACTCTACTATCCAATCAGGAAAAGCAGAACTTGTCCTTGACGGAGCTCGATGTTTCCAGACTGGGTGCCATTGTTAAAATTCTCAAAGATACTTCACATTATCATTCTAGTAAATTTGCAGATGCTGATATCGCCCTATTACTGAATTTGCTTCGGTCATGGCCAAGCTCAATGATATTTCCTGTCATTGATATTGTAAGGATGATAGTTCTTCATCCAGAAGGGGCTCTTGTACTTCACAAGCATTTTGGAGCTGAAAATGACATTCTAATGGAATTGATTAAGAAAGTCACCATAAACCCGACAATTCCTGCGAATCTGTTGACCAGCATTCGAGCTGTGACTAATCTCTTTAAGAATTCATGCTATTACAACTGGTTGCAAAAACATCGTAGTGAGGTTCTTGATGCTTTCTCAAATTGTAGTTCATCTACAAACAAAAATTTGCAGCTATCCTACTCTACCTTGATTCTCAATTATGCTGTGCTATTGATTGAATCAAAAGATCAAGAAGGTCAATCTCAAGTTCTATCAGCAGCTCTTGAGATTGTCGAGGATGAAAATGTAGAAGTTGATTCCAAATTTCGTGCTTTTGTTGCTGTTGGATCACTGATGCTCGAGGGTCTTGTGAAAAAAATAGCACTGGACTTTGATGTTTTGAACATTGCAAAAGCAGCTAAGGGTTCTAAGGAAGCCAAGATTGCTGAAGTTGGAGCTGACATAGAGTTGCTAACAAAGAGCTGA 2265 0.4296 MDIDFKEYQLRCELHGHEDDVRGICVCGNDGIATSSRDKTVRFWSPENRKFVSSKVLVGHSSFVGPLVWIPPNPELPQGGVASGGMDTLVLVWDLSTGEKAHTLKGHQLQVTSIAFDDGDVVSASVDCTLRRWKNGQCTETWEAHKAPVQAVIKLPTGELVTGSSDTTLKLWRGKTCVHTFEGHSDTVRGLAVMSGLGILSASHDGSLRLWAVSGQVLMEMVGHTAIVYSVDSHSSGLIVSGSEDRFAKIWKDGVCVQSIEHPGCVWDAKFMENGDIVTACSDGIVRIWTVNQDYFADQLELDLYTSQLSQYKSSRKRVGGLKLEELPGLEALKIPGTSDGQTKVVREGDNGVAYAWNMAEQKWDKIGEVVDGPEESNRPFMDGIQYDYVFDVDIGDGMPIRKLPYNRSDNPYDVADKWLLKENLPLSFLEQIVQFILQNTGQKDITFDASFRDPYTGSNAYIPGQPSGMSDISAKPTFKHIPKKGMLVFDTAQFDGILKKITEFNNTLLSNQEKQNLSLTELDVSRLGAIVKILKDTSHYHSSKFADADIALLLNLLRSWPSSMIFPVIDIVRMIVLHPEGALVLHKHFGAENDILMELIKKVTINPTIPANLLTSIRAVTNLFKNSCYYNWLQKHRSEVLDAFSNCSSSTNKNLQLSYSTLILNYAVLLIESKDQEGQSQVLSAALEIVEDENVEVDSKFRAFVAVGSLMLEGLVKKIALDFDVLNIAKAAKGSKEAKIAEVGADIELLTKS* 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0536 754 Gene3D - 374 449 IPR038122 -
Lja3g0536 754 ProSiteProfiles Trp-Asp (WD) repeats profile. 142 172 IPR001680 GO:0005515
Lja3g0536 754 PANTHER PHOSPHOLIPASE A2-ACTIVATING PROTEIN 4 752 - -
Lja3g0536 754 ProSiteProfiles PUL domain profile. 480 751 IPR013535 -
Lja3g0536 754 Pfam PUL domain 482 747 IPR013535 -
Lja3g0536 754 Pfam WD domain, G-beta repeat 176 211 IPR001680 GO:0005515
Lja3g0536 754 Pfam WD domain, G-beta repeat 99 133 IPR001680 GO:0005515
Lja3g0536 754 Pfam WD domain, G-beta repeat 255 289 IPR001680 GO:0005515
Lja3g0536 754 Pfam WD domain, G-beta repeat 136 172 IPR001680 GO:0005515
Lja3g0536 754 Pfam WD domain, G-beta repeat 12 45 IPR001680 GO:0005515
Lja3g0536 754 Pfam WD domain, G-beta repeat 216 252 IPR001680 GO:0005515
Lja3g0536 754 SUPERFAMILY WD40 repeat-like 5 301 IPR036322 GO:0005515
Lja3g0536 754 ProSiteProfiles Trp-Asp (WD) repeats profile. 14 54 IPR001680 GO:0005515
Lja3g0536 754 ProSiteProfiles Trp-Asp (WD) repeats profile. 181 211 IPR001680 GO:0005515
Lja3g0536 754 Pfam PFU (PLAA family ubiquitin binding) 336 444 IPR015155 -
Lja3g0536 754 Gene3D - 480 751 IPR011989 -
Lja3g0536 754 ProSiteProfiles Trp-Asp (WD) repeats profile. 57 103 IPR001680 GO:0005515
Lja3g0536 754 PRINTS G protein beta WD-40 repeat signature 199 213 IPR020472 -
Lja3g0536 754 PRINTS G protein beta WD-40 repeat signature 160 174 IPR020472 -
Lja3g0536 754 PRINTS G protein beta WD-40 repeat signature 81 95 IPR020472 -
Lja3g0536 754 ProSitePatterns Trp-Asp (WD) repeats signature. 81 95 IPR019775 -
Lja3g0536 754 CDD WD40 10 289 - -
Lja3g0536 754 ProSiteProfiles PFU domain profile. 356 451 IPR015155 -
Lja3g0536 754 Gene3D - 4 307 IPR015943 GO:0005515
Lja3g0536 754 PANTHER PHOSPHOLIPASE A-2-ACTIVATING PROTEIN 4 752 - -
Lja3g0536 754 SMART WD40_4 174 212 IPR001680 GO:0005515
Lja3g0536 754 SMART WD40_4 97 134 IPR001680 GO:0005515
Lja3g0536 754 SMART WD40_4 50 94 IPR001680 GO:0005515
Lja3g0536 754 SMART WD40_4 214 252 IPR001680 GO:0005515
Lja3g0536 754 SMART WD40_4 253 290 IPR001680 GO:0005515
Lja3g0536 754 SMART WD40_4 135 173 IPR001680 GO:0005515
Lja3g0536 754 SMART WD40_4 7 45 IPR001680 GO:0005515
Lja3g0536 754 ProSiteProfiles Trp-Asp (WD) repeats profile. 221 252 IPR001680 GO:0005515
Lja3g0536 754 ProSiteProfiles Trp-Asp (WD) repeats profile. 104 134 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0536 1 753 Acyl Lipid Metabolism Gene Families AT3G18860 70.277 0.0 1150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0536 K14018 - gmx:100816481 1359.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0536 3 5359873 5371235 Lja3g0536 3 5359873 5371235 ECH