Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0526 ATGGCAGCTCAAGCTGTGTCAGTGCCTGCGACTGCAACCTTCTCTATCGCTTCTCGCCGGAACACTCCGTCACACCTTGCGTTTTCTCACAGAAATCTATGCCAGATAGCTTCTAACTTGTCAAGCCCCTATGGTGGTCATTCATCGAAATTTGGGTTATCAAGTAAAAGCCCTGGCTTTCCTTTAAAGCTTGATGAGAAAAATACCTATGATGCTAGTACAAGTTACGGTGCAATTGAAGCCAAGAAGGGGAACCCACCAATAACACCAGCAGTGATGACTCCTGGAGGACCTCTTGATCTCTCGTCTGTTTTGTTCAGGAATCGTATAATATTCATAGGACAGCCAGTTAACGCACAAGTGGCTCAGAGAGTTATATCGCAGCTTGTGACTCTGGCTACTATTGATCCAAATGCAGACATACTGATGTATATCAATTGCCCTGGTGGAAGCACATATTCAGTATTGGCAATTTATGATTGCATGTCTTGGATAAAGCCCAAGGTTGGTACAGTATGTTTCGGAGTAGCGGCAAGCCAAGGAGCACTTCTCCTTGCTGGTGGGGAGAAGGGAATGCGCTATTCAATGCCAAATTCCCGCATAATGATACATCAACCCCAGAGTGGATGTGGGGGTCATGTTGAGGATGTAAGACGCCAAGTGAATGAAGCTGTGCAATCTCGCCATAAAATTGACAAGATGTATAGTGCTTTCACCGGACAGCCAATCGAGAAGGTGCAACAGTACACAGAGAGGGACCGTTTTCTTTCTGTTTCTGAGGCTTTGGAGTTTGGTCTTATTGATGGTGTACTGGAAACAGAGTATTGA 828 0.4541 MAAQAVSVPATATFSIASRRNTPSHLAFSHRNLCQIASNLSSPYGGHSSKFGLSSKSPGFPLKLDEKNTYDASTSYGAIEAKKGNPPITPAVMTPGGPLDLSSVLFRNRIIFIGQPVNAQVAQRVISQLVTLATIDPNADILMYINCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQGALLLAGGEKGMRYSMPNSRIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKIDKMYSAFTGQPIEKVQQYTERDRFLSVSEALEFGLIDGVLETEY* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0526 275 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 88 274 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lja3g0526 275 Gene3D - 79 275 - -
Lja3g0526 275 CDD S14_ClpP_2 100 270 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lja3g0526 275 Pfam Clp protease 100 273 IPR023562 -
Lja3g0526 275 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 6, CHLOROPLASTIC 13 275 - -
Lja3g0526 275 SUPERFAMILY ClpP/crotonase 99 273 IPR029045 -
Lja3g0526 275 ProSitePatterns Endopeptidase Clp histidine active site. 193 206 IPR033135 -
Lja3g0526 275 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 13 275 IPR023562 -
Lja3g0526 275 PRINTS Clp protease catalytic subunit P signature 100 115 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lja3g0526 275 PRINTS Clp protease catalytic subunit P signature 171 188 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lja3g0526 275 PRINTS Clp protease catalytic subunit P signature 192 211 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lja3g0526 275 PRINTS Clp protease catalytic subunit P signature 140 160 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lja3g0526 275 PRINTS Clp protease catalytic subunit P signature 249 268 IPR001907 GO:0004176|GO:0004252|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0526 Lja-Chr3 5261871 5266312 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0526 K01358 - gmx:100799710 481.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0526 3 5261871 5266312 Lja3g0526 3 5261871 5266312 ECH