Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0521 ATGGAGGAGAAACGCCGCGAAACCGCGTCTCAACCTCCATCAACCACCGATTCACCGGCATCGGAACCCGTTCCACCACGCCGCCGCGCCGGAGGCAACAAGAGGAAGGCCAGCGCCTCCAATTCCTCTTCCATACCCTCCAAACGCGCCACGCGCGAGAAGGCCTCGCCTATTCACTTTCCTCCTCTCCACAATGGCCCTCTCACCAGGGCTCGCCAAATCCCTAGCAATCTCTCCTCCGCCGCGGCATCGGAAGGCGGAGGTTTCGCATCTGCTCCCGCTGCTGTGAAACACTCGGAACGCGCATCGCAGGGACAAGGCTTGGGCGGAGAGTCGTCGGCTCTGGCGGAGATGCTCAAGAAGGAGAGCGAGTGGGAGTCTCTGGAAGCTGCAATTGAAGCTGAATTCGAAGCTATCAGATCTCGTGGTGCCAATGCTCACGTTGTTCCTACTCATTGCGGTTGGTTTCATTGGTCTAATATCCATCCGATTGAGAAGCGTATGTTGCCTTCTTTCTTTAATGGCAAAAGTGAAAATCGGACTCCGGATATATACATGGGGGTACGAAATTGGATAATGAAGAAATTTCATTCAAATCCAAATGTACAAATTGAATCGAAAGATTTGTCAGATCTTGATGTTGGAGAATTGGATGCTAGGCAAGAGATAATGGAGTTTCTGGACTATTGGGGTTTAATTAACTTCCACCCATTCCCTTCGACGGGTTCTGCGGTGCCCACCTCCAGTGATGACGGGGAATCAGAAAAGAATTCCTTGCTTGAAAAATTGTATCACTTTGAAACTCTCCAGTTAAGTCCACCTATTGTTCAAAAGACTAGCCTAATGACTCCAGCTATGACCTCTGGTTTGTTTCCAGAGTCTACAATTTCTGAAGAGTTGGTGAAACAAGAGGGCCCTGCAGTTGAGATGCTTGAGTACCATTGCAACTCTTGTTCCGCTGATTGTTCTCGCAAACGTTACCATTGTCAGAAGCAGGCAGATTTTGATCTCTGTACGGACTGCTTTAGTAATGGAAGATTTGGCTCTGGCATGTCTTCGTCAGATTTTATAGTCATGGAACCAGCTGAAGTTGCTGGGGTTAGTGGTGGAAACTGGACTGATCAGGAGACCCTTCTGCTCCTTGAAGCATTAGAACTTTATAAAGAAAATTGGAATGAAATTGCAGAGCATGTTGGAACAAAATCAAAAGCTCAGTGCATATTGCACTTTGTTCAAATGCCAATTGAGGATGCCTTTGTTGATTGTGATGATGATGTTGATGCTAGATGCAAAGAAACTGCAGATCCAGCTGCAACAGTCGATGCATCTGTAGACAAAGGTGCTTCAGAAGCTGTGGAAAATGACACTAGTCATAGCAGCAAAGGCCATGATGAAAGTCCTGACACTGAAGATGTTAAAGTTAATCAGGAGGAGACTCCAAAGTTACAAGATGCTACTGATGTGAAAACTAGTGAGGGAACTTCTAAATCAGAAGATGCTGTTAATGTAAAATTTGGTCAAAAAGTAGGCAATGATCGTGCTCTAAATGCTCTTAAGGAAGCATTTGAAGCTGTTGGTTACTCTTCAGAGCCCGTAGGCCCTTCTTCACTTGCTGAAGTGGGTAATCCTGTCATGGCATTGGCAGCTTTTCTTGCACAATTGGTGGGTTCCGATGTAGCTGTTGCTTCAGCCCATAGCTCCATAAAATCCATGTCTGGAAATTCTCCTGGAACTGAGCTTGCTGCAAGGTGTTGCTTTATTCTAGAAGATCCACCAGATCATAAGGAACCAACTTGTTCTGAGAGGGATTCTGAAAGTAAGGGAGTTCAGGATGACACCAATGATAAACAGGATAAACTGATGTCAGATGATAAAGCTTTAGCAAATGATCACAAGGACATGGAAATTGAAATTAACGCTTCAGAAGACCAGAGACAGCTGAGCTCTACAGATGATGGTGCCTTGAAAGATCCTAGTTCTTCAAAGGAGCAAGCAATGATTGATCATGAGTCTGAGCTTGACAATTGTAATGATCCCACCAATTCAAAGACACCAAATGATAAAGTTCCAGGCACTCTGCAGGATTCAGATGGTTCAACATCCAAGAGTGAAATTCCACCTAATTCAGAGGAGGTTCGGGAGGGAACTTTAACTGAAGAACCTTGCCATCTTGTGGAGGAACTAAAGGACGGACCTGTGTCTGAATCAAGTCCGTCAGAAAAGAAAGAAGTTCAGCAGTCAATTAAATCCAATTTACCAGGAGAGCATTCAAAGCCAGTAGATACACCAAAGTCTGCTGAGATGGTTTCTGATTCTATATCTTTAGATAAGAACCAACCTCAAACCCCATTATCTACAAATCCAGTTCTCGAGTCTGGGAAAATGAAGGACTCTGAAATGGATGTTGATATTGGTTCTAATTCGTTGCCATCAGAAAAGATTGACTCTCAGCCACCATTTACACCAATATCATCCCAATATAATGGGGCAGAAAAGGATGTAGATATGATATCGTCTTCGCATCCAATTAAATCAAATTCTGGTGCTGAAAATGATGCAACTACAGGGACAGGTGAAGATCATGTGGAAAATGCTACGAAAGTGAAAGATGATGGTGCAAAAACTAATTTGGATAACAATTTTGAAAAATTGAAACGTGCTGCAGTTTCTACACTTGCTGCAGCAGCTGTAAAGGCAAAACTTCTAGCAGATCAGGAAGAAGATGAAATCCGACAACTAACTTCTTCGTTGATAGAAAAGCAGTTGCATAAGTTGGAAACAAAGTTGGCTTTCTTCAATGGTATGGAGAATGTGGTGATGAGGGTGAGGGAGCATTTAGATCGATCACGGCACAAGCTTTATCATGAGCGTGCTCTGATAATTGCATCCCGGCTAGGTTTACCAGCTTCCTCATCCAGAGGTGTACCACCATCTGTACAAACCAATAGAATTCCTATGAATTTTGCAAACTCACTTCCCAGACCTCAAATCGCCATGAATCCCCAAAGACAAATGATATCTAGACCTGTGGGCACTGCGGCTTCGACTCTTCCAAACCCCTTTGCATCTGCAAATCCAGCAGGAAATTCAGTTCGGCCATCCAGCCAGGAAAATCTTTCTTCTGTTGGGACAAAATAA 3138 0.443 MEEKRRETASQPPSTTDSPASEPVPPRRRAGGNKRKASASNSSSIPSKRATREKASPIHFPPLHNGPLTRARQIPSNLSSAAASEGGGFASAPAAVKHSERASQGQGLGGESSALAEMLKKESEWESLEAAIEAEFEAIRSRGANAHVVPTHCGWFHWSNIHPIEKRMLPSFFNGKSENRTPDIYMGVRNWIMKKFHSNPNVQIESKDLSDLDVGELDARQEIMEFLDYWGLINFHPFPSTGSAVPTSSDDGESEKNSLLEKLYHFETLQLSPPIVQKTSLMTPAMTSGLFPESTISEELVKQEGPAVEMLEYHCNSCSADCSRKRYHCQKQADFDLCTDCFSNGRFGSGMSSSDFIVMEPAEVAGVSGGNWTDQETLLLLEALELYKENWNEIAEHVGTKSKAQCILHFVQMPIEDAFVDCDDDVDARCKETADPAATVDASVDKGASEAVENDTSHSSKGHDESPDTEDVKVNQEETPKLQDATDVKTSEGTSKSEDAVNVKFGQKVGNDRALNALKEAFEAVGYSSEPVGPSSLAEVGNPVMALAAFLAQLVGSDVAVASAHSSIKSMSGNSPGTELAARCCFILEDPPDHKEPTCSERDSESKGVQDDTNDKQDKLMSDDKALANDHKDMEIEINASEDQRQLSSTDDGALKDPSSSKEQAMIDHESELDNCNDPTNSKTPNDKVPGTLQDSDGSTSKSEIPPNSEEVREGTLTEEPCHLVEELKDGPVSESSPSEKKEVQQSIKSNLPGEHSKPVDTPKSAEMVSDSISLDKNQPQTPLSTNPVLESGKMKDSEMDVDIGSNSLPSEKIDSQPPFTPISSQYNGAEKDVDMISSSHPIKSNSGAENDATTGTGEDHVENATKVKDDGAKTNLDNNFEKLKRAAVSTLAAAAVKAKLLADQEEDEIRQLTSSLIEKQLHKLETKLAFFNGMENVVMRVREHLDRSRHKLYHERALIIASRLGLPASSSRGVPPSVQTNRIPMNFANSLPRPQIAMNPQRQMISRPVGTAASTLPNPFASANPAGNSVRPSSQENLSSVGTK* 1046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0521 1045 Pfam Zinc finger, ZZ type 312 348 IPR000433 GO:0008270
Lja3g0521 1045 SUPERFAMILY Homeodomain-like 154 236 IPR009057 -
Lja3g0521 1045 SUPERFAMILY Homeodomain-like 367 419 IPR009057 -
Lja3g0521 1045 MobiDBLite consensus disorder prediction 434 497 - -
Lja3g0521 1045 Pfam SWIRM domain 150 235 IPR007526 GO:0005515
Lja3g0521 1045 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 370 406 IPR017930 -
Lja3g0521 1045 MobiDBLite consensus disorder prediction 641 655 - -
Lja3g0521 1045 MobiDBLite consensus disorder prediction 592 623 - -
Lja3g0521 1045 ProSiteProfiles SWIRM domain profile. 147 244 IPR007526 GO:0005515
Lja3g0521 1045 MobiDBLite consensus disorder prediction 707 737 - -
Lja3g0521 1045 Pfam Myb-like DNA-binding domain 370 412 IPR001005 -
Lja3g0521 1045 ProSiteProfiles Myb-like domain profile. 370 414 IPR001005 -
Lja3g0521 1045 MobiDBLite consensus disorder prediction 1 110 - -
Lja3g0521 1045 SMART sant 368 416 IPR001005 -
Lja3g0521 1045 MobiDBLite consensus disorder prediction 656 676 - -
Lja3g0521 1045 Gene3D - 367 418 - -
Lja3g0521 1045 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3D 42 1008 - -
Lja3g0521 1045 MobiDBLite consensus disorder prediction 456 485 - -
Lja3g0521 1045 MobiDBLite consensus disorder prediction 838 865 - -
Lja3g0521 1045 MobiDBLite consensus disorder prediction 738 753 - -
Lja3g0521 1045 Gene3D - 307 355 IPR043145 -
Lja3g0521 1045 ProSiteProfiles SANT domain profile. 367 418 IPR017884 -
Lja3g0521 1045 CDD ZZ_RSC8 313 357 IPR041984 -
Lja3g0521 1045 MobiDBLite consensus disorder prediction 767 792 - -
Lja3g0521 1045 Gene3D - 153 238 IPR036388 -
Lja3g0521 1045 PANTHER SWI/SNF COMPLEX-RELATED 42 1008 - -
Lja3g0521 1045 CDD SANT 388 413 IPR001005 -
Lja3g0521 1045 ProSitePatterns Zinc finger ZZ-type signature. 315 341 IPR000433 GO:0008270
Lja3g0521 1045 MobiDBLite consensus disorder prediction 838 861 - -
Lja3g0521 1045 MobiDBLite consensus disorder prediction 809 826 - -
Lja3g0521 1045 MobiDBLite consensus disorder prediction 677 706 - -
Lja3g0521 1045 Pfam SWIRM-associated region 1 891 967 IPR032451 -
Lja3g0521 1045 MobiDBLite consensus disorder prediction 639 826 - -
Lja3g0521 1045 MobiDBLite consensus disorder prediction 1010 1045 - -
Lja3g0521 1045 ProSiteProfiles Zinc finger ZZ-type profile. 310 364 IPR000433 GO:0008270
Lja3g0521 1045 MobiDBLite consensus disorder prediction 35 50 - -
Lja3g0521 1045 SUPERFAMILY RING/U-box 307 368 - -
Lja3g0521 1045 MobiDBLite consensus disorder prediction 70 84 - -
Lja3g0521 1045 SMART zz_5 309 353 IPR000433 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0521 Lja-Chr3 5215659 5223252 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0521 313 410 EF-hand Containing Proteins AT3G07740 37.383 1.39e-13 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0521 K11649 - gmx:100799723 1402.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0521 3 5215659 5223252 Lja3g0521 3 5215659 5223252 ECH