Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0519 ATGGCTCAACCGCTCGTGAAGAAGGACGATGACCGCGACGACGAAGCTGACTATTCCCCATTTTTGGGAATTGAGAAGGGGGCTGTTCTTCAGGAGGCCAGGGTTTTTAACGATCCGCAACTAGATGCTAGGAGATGTTCACAGGTTATCACAAAACTCTTATACCTACTGAATCAGGGAGAGTCATTTACAAAGGTCGAAGCCACGGAAGTTTTCTTTGCTGTGACCAAGCTTTTCCAGTCTCGAGATCTTGGGTTGAGGAGAATGGTCTACCTTATGATAAAGGAACTCTCCCCCTGTGCAGATGAGGTAATTATCGTCACAAGCTCTCTCATGAAGGACATGAATAGCAAGACTGATATGTATAGGGCAAATGCCATTCGTGTGCTCTGTCGTATTACGGATGGAACTCTCCTTACCCAAATTGAGAGATATTTGAAACAAGCAATTGTAGATAAGAATCCAGTTGTTGCAAGTGCAGCCCTAGTCAGTGGCATTCATATACTCCAGACCAATCCTGAGATTGTAAAGAGGTGGAGCAATGAGGTTCAGGAAGCTGTTCAATCAAGAGCAGCTCTTGTCCAATTTCATGCACTGGCTTTGCTACATCAGATACGACAGAATGATCGGCTAGCTGTTAGCAAGCTGGTTACCAGCTTGACAAGAGGAAGTGTTCGCTCTCCTTTGGCCCAATGCCTTTTGATCCGCTATACAAGTCAGGTTATACGGGAGGCAGGAAATAATACACAAGCAGGAGACCGCCCCTTCTTTGATTTTCTTGAGAGTTGCCTTCGTCACAAGTCCGAGATGGTGATTTTTGAAGCTGCTAAGGCAATTACAGAGCTCAACGGTGTAACTAGCAGAGAATTAACTCCAGCAATTACTGTTCTCCAGCTCTTCTTAAGCTCTTCTAAGCCAGTCTTGAGATTTGCTGCTGTCCGCACCTTAAACAAGGTGGCAATGACACATCCAATGGCAGTCACTAACTGCAATATCGATATGGAAAGTTTAATCTCTGACCAGAATAGAAGCATAGCCACACTGGCTATTACTACTCTTCTAAAGACAGGAAATGAATCAAGTGTAGAACGTCTTATGAAGCAGATTACAAATTTCATGTCTGATATTGCTGATGAGTTCAAAATTGTTGTTGTTGAAGCAATAAGATCATTGTGCTTGAAGTTTCCGTTAAAATACAGATCCCTGATGAACTTCCTGAGTAGCATTCTTAGAGAAGAAGGTGGTTTCGAGTACAAGAAAGCAATTGTTGATTCAATTGTAATTCTGATTAGAGATATCCCTGATGCTAAGGAGAGCGGGTTGCTTCATCTTTGTGAGTTCATTGAAGATTGTGAATTCACTTATTTGTCCACACAGATACTTCACTTCCTGGGAGTTGAAGGACCCAAAACATCAGATCCCAGCAAATATATACGTTATATTTATAACAGAGTACATCTTGAGAATGCAACTGTTAGGGCCAGTGCTGTGAGCACACTTGCTGGGTTTGGTGCTGCAGTTGATGCTTTAAAGCCCCGCATATTTGTTCTGCTAAGGCGATGTCTTTTTGACAGTGATGATGAGGTTCGTGATAGAGCAACACTTTATCTGAACACCCTTGGAGGTGATGGACTTGGGACTGAGAATGATCGGAAGGACTTCCTCTTTGGGTCACTTGATGTCCCACTTGTCAATCTGGAGACTAGTTTGAAAAACTATGAGCCTTCGGAAGAGGCTTTTGATATTAATTCAGTGCCAAAGGAGGTCAAGTCTCAGCCCCTTGCAGAAAAGAAAGCTCCTGGTAAGAAGCCAACTGGTTTGGGTGCTCCTCCCAGTGGCCCCCCATCTACTGCAGATTCATATGAAAGGCTACTTCTTTCCATTCCTGAGTTTGCAAACTTTGGGAAGTTATTTAAGTCCTCAGCACCTGTGGAGCTTACTGAAGCTGAGACAGAATATGCAGTTAATGTTGTTAAACACATTTTTGATAGGCATATTGTGTTTCAGTACAACTGCACAAACACAATACCGGAACAACTATTGGAAGATGTTAATGTAATTGTGGACGCTTCAGAAGCAGAAGAATTTTCTGAGTTGTTCTCCAAGCCTCTCAGATCTCTTCCTTATGATTCACCCGGGCAGACTTTTGTGGCATTTGAGAAGCCTGAGGGATTGCCAACCACCGGAAAATTTTCTAACACTCTGAAATTTATTGTGAAAGAGGTTGACCCAACCACTGGTGAGGCTGAAGATGATGGCGTTGAAGATGAATATCAGCTGGAGGATCTGGAGGTTGTTTCAGCTGATTACATAGTGAAAGTAGGGGTGTCTAATTTCAGGAATGCATGGGAAAGCATGGGCCCTGATTGTGAACGAGTGGATGAATATGGTCTTGGCGCAAGGGAAAGCTTGGCTGAGGCTGTAAATACCGTCATCAATCTTCTTGGCCTGCAGCCTTGTGAGGGCACAGAGGCAGTACCACCCAATTCAAGGTCGCACACATGCTTATTGTCAGGTGTATTCATAGGGAATGTGAAGGTACTTGTGCGGTTGTCTTTCGGACTTGATGGTCCAAAGGATGTTGCCATGAAACTGTCTGTCAGATCCGACGATGAAACTGTCAGCGATGCCATCCATGAGATTGTGGCAAGTGGTTAG 2658 0.4387 MAQPLVKKDDDRDDEADYSPFLGIEKGAVLQEARVFNDPQLDARRCSQVITKLLYLLNQGESFTKVEATEVFFAVTKLFQSRDLGLRRMVYLMIKELSPCADEVIIVTSSLMKDMNSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHILQTNPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGSVRSPLAQCLLIRYTSQVIREAGNNTQAGDRPFFDFLESCLRHKSEMVIFEAAKAITELNGVTSRELTPAITVLQLFLSSSKPVLRFAAVRTLNKVAMTHPMAVTNCNIDMESLISDQNRSIATLAITTLLKTGNESSVERLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSSILREEGGFEYKKAIVDSIVILIRDIPDAKESGLLHLCEFIEDCEFTYLSTQILHFLGVEGPKTSDPSKYIRYIYNRVHLENATVRASAVSTLAGFGAAVDALKPRIFVLLRRCLFDSDDEVRDRATLYLNTLGGDGLGTENDRKDFLFGSLDVPLVNLETSLKNYEPSEEAFDINSVPKEVKSQPLAEKKAPGKKPTGLGAPPSGPPSTADSYERLLLSIPEFANFGKLFKSSAPVELTEAETEYAVNVVKHIFDRHIVFQYNCTNTIPEQLLEDVNVIVDASEAEEFSELFSKPLRSLPYDSPGQTFVAFEKPEGLPTTGKFSNTLKFIVKEVDPTTGEAEDDGVEDEYQLEDLEVVSADYIVKVGVSNFRNAWESMGPDCERVDEYGLGARESLAEAVNTVINLLGLQPCEGTEAVPPNSRSHTCLLSGVFIGNVKVLVRLSFGLDGPKDVAMKLSVRSDDETVSDAIHEIVASG* 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0519 885 Pfam Coatomer gamma subunit appendage platform subdomain 620 765 IPR013040 GO:0005198|GO:0006886|GO:0016192|GO:0030126
Lja3g0519 885 Gene3D - 23 316 IPR011989 -
Lja3g0519 885 PIRSF Gamma-COP 7 883 IPR017106 -
Lja3g0519 885 Pfam Coatomer subunit gamma-1 C-terminal appendage platform 768 882 IPR032154 -
Lja3g0519 885 PANTHER COATOMER SUBUNIT GAMMA 1 885 - -
Lja3g0519 885 PANTHER COATOMER SUBUNIT GAMMA 1 885 IPR017106 -
Lja3g0519 885 SUPERFAMILY Clathrin adaptor appendage domain 615 769 IPR013041 -
Lja3g0519 885 MobiDBLite consensus disorder prediction 589 618 - -
Lja3g0519 885 Pfam Adaptin N terminal region 29 540 IPR002553 GO:0006886|GO:0016192|GO:0030117
Lja3g0519 885 SUPERFAMILY Subdomain of clathrin and coatomer appendage domain 770 882 IPR009028 GO:0006886|GO:0016192|GO:0030117
Lja3g0519 885 Gene3D Coatomer, gamma subunit, appendage domain 615 766 IPR037067 GO:0005198|GO:0006886|GO:0016192|GO:0030126
Lja3g0519 885 Gene3D - 767 883 IPR012295 -
Lja3g0519 885 SUPERFAMILY ARM repeat 29 540 IPR016024 -
Lja3g0519 885 Gene3D - 333 541 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0519 Lja-Chr3 5202591 5209964 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0519 K17267 - gmx:100789362 1625.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0519 3 5202591 5209964 Lja3g0519 3 5202591 5209964 ECH