Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0518 ATGTCTGTTACGGAGCTCAAGGAGTGTCACTCAGCTACCACCGACACTGTCAACAATCTCAGGGACCGGTTGAAGCAGAAACGCCTTTCTTTGCTTGATACTGATATTTCTGGGTATGCTCGGTCTCAGGGTAGAACTCCTGTGAGCTTTGGACCCACGGATCTAGTTTGCTGTAGAACTTTACAGGGTCATACTGGAAAGGTGTATTCATTGGATTGGACTTCTGAGAGGAATCAGATTGTTAGTGCGTCCCAGGATGGCCGGTTAATAGTGTGGAATGCTCTAACAAGGCAGAAAATTCATGCCATAAAGCTGCCTTGTGCATGGGTCATGAGCTGTGCTTTCTCGCCAACTGGTCAGTCTGTTGCGTGCGGTGGTCTTGACAGTGTGTGCTCTATTTTCAATCTTAGTTCCCCCACTGATAAGGATGGAAATGTACCTGTTACCCGGATGCTTAGCGGACATAAAGGTTATGTTTCCTCTTGTCAGTATGTTCCAGATGAAGCCGCTCACTTAATCACTGGTTCTGGTGACCAGACATGTGTTTTATGGGATGTTACCACTGGTCTTAAAACATCTGTCTTTGGAGGTGAATTTCAGTCTGGCCATGCTGCAGATGTTCTTAGCATCTCCATTAATGGGTCCAACTCAAGAATGTTTGCATCTGGTTCTTGTGATGCAACTGCTCGATTGTGGGATACTCGCGTGGCAAGTCGAGCGGTGCGGACATTTCATGGGCATGAGGGAGATGTTAATGCCATCAAGTTCTTCCCAGATGGAAATAGATTTGGAACTGGCTCAGAAGATGGAACTTGCAGATTGTTTGACATTAGGACTGGACACCAACTTCAAGTGTATTATCAGCAACACGGTGACGACATCCCACCTGTGACCTCAATTGCATTCTCCATATCAGGAAGACTTCTTTTTGCTGGATATGCAAATGGAGATTGCTATGTTTGGGACACTTTATTGGCAAAGGTGGTCTTGAATATAGGATCTCTCCAAGACTCTCATGAGGGCAGGATCAGCTGTTTAGGTTTGTCAGCTGATGGAAGCGCCTTGTGTACAGGAGGTTGGGACACAAACCTGAAGATATGGGCATTTGGAGGGCATAGAAGAACTTGA 1128 0.461 MSVTELKECHSATTDTVNNLRDRLKQKRLSLLDTDISGYARSQGRTPVSFGPTDLVCCRTLQGHTGKVYSLDWTSERNQIVSASQDGRLIVWNALTRQKIHAIKLPCAWVMSCAFSPTGQSVACGGLDSVCSIFNLSSPTDKDGNVPVTRMLSGHKGYVSSCQYVPDEAAHLITGSGDQTCVLWDVTTGLKTSVFGGEFQSGHAADVLSISINGSNSRMFASGSCDATARLWDTRVASRAVRTFHGHEGDVNAIKFFPDGNRFGTGSEDGTCRLFDIRTGHQLQVYYQQHGDDIPPVTSIAFSISGRLLFAGYANGDCYVWDTLLAKVVLNIGSLQDSHEGRISCLGLSADGSALCTGGWDTNLKIWAFGGHRRT* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0518 375 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 152 189 - -
Lja3g0518 375 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 200 235 - -
Lja3g0518 375 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 244 280 - -
Lja3g0518 375 Gene3D - 9 368 IPR015943 GO:0005515
Lja3g0518 375 ProSiteProfiles Trp-Asp (WD) repeats profile. 200 242 IPR001680 GO:0005515
Lja3g0518 375 ProSiteProfiles Trp-Asp (WD) repeats profile. 61 102 IPR001680 GO:0005515
Lja3g0518 375 ProSiteProfiles Trp-Asp (WD) repeats profile. 244 285 IPR001680 GO:0005515
Lja3g0518 375 PRINTS Beta G protein (transducin) signature 61 77 IPR001632 -
Lja3g0518 375 PRINTS Beta G protein (transducin) signature 117 134 IPR001632 -
Lja3g0518 375 PRINTS Beta G protein (transducin) signature 80 94 IPR001632 -
Lja3g0518 375 PRINTS Beta G protein (transducin) signature 99 114 IPR001632 -
Lja3g0518 375 ProSiteProfiles Trp-Asp (WD) repeats profile. 336 375 IPR001680 GO:0005515
Lja3g0518 375 PIRSF GNBP_B 1 370 - -
Lja3g0518 375 SUPERFAMILY WD40 repeat-like 54 367 IPR036322 GO:0005515
Lja3g0518 375 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN, BETA SUBUNIT-RELATED 1 372 - -
Lja3g0518 375 SMART WD40_4 145 185 IPR001680 GO:0005515
Lja3g0518 375 SMART WD40_4 328 368 IPR001680 GO:0005515
Lja3g0518 375 SMART WD40_4 54 93 IPR001680 GO:0005515
Lja3g0518 375 SMART WD40_4 192 233 IPR001680 GO:0005515
Lja3g0518 375 SMART WD40_4 279 322 IPR001680 GO:0005515
Lja3g0518 375 SMART WD40_4 237 276 IPR001680 GO:0005515
Lja3g0518 375 SMART WD40_4 96 135 IPR001680 GO:0005515
Lja3g0518 375 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN BETA G PROTEIN BETA 1 372 IPR016346 GO:0007165
Lja3g0518 375 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 61 93 - -
Lja3g0518 375 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 336 375 - -
Lja3g0518 375 PRINTS G protein beta WD-40 repeat signature 220 234 IPR020472 -
Lja3g0518 375 PRINTS G protein beta WD-40 repeat signature 172 186 IPR020472 -
Lja3g0518 375 PRINTS G protein beta WD-40 repeat signature 80 94 IPR020472 -
Lja3g0518 375 Pfam WD domain, G-beta repeat 241 276 IPR001680 GO:0005515
Lja3g0518 375 Pfam WD domain, G-beta repeat 201 233 IPR001680 GO:0005515
Lja3g0518 375 Pfam WD domain, G-beta repeat 338 367 IPR001680 GO:0005515
Lja3g0518 375 Pfam WD domain, G-beta repeat 287 322 IPR001680 GO:0005515
Lja3g0518 375 Pfam WD domain, G-beta repeat 150 185 IPR001680 GO:0005515
Lja3g0518 375 Pfam WD domain, G-beta repeat 57 93 IPR001680 GO:0005515
Lja3g0518 375 Pfam WD domain, G-beta repeat 109 135 IPR001680 GO:0005515
Lja3g0518 375 ProSiteProfiles Trp-Asp (WD) repeats profile. 152 194 IPR001680 GO:0005515
Lja3g0518 375 ProSitePatterns Trp-Asp (WD) repeats signature. 172 186 IPR019775 -
Lja3g0518 375 CDD WD40 57 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0518 Lja-Chr3 5198013 5201958 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0518 152 369 Miscellaneous Gene Families AT5G08390 27.854 4.64e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0518 K04536 - gmx:100794776 732.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0518 3 5198013 5201958 Lja3g0518 3 5198013 5201958 ECH