Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0494 ATGGTGTCTGCTGCTTGTGTGGCCTGGACAACCAGTTCACAGTTAGCAAAATCTAAAAAAGACAGTACTTTTCTGCAAGATGATGGTTTTCTAGGTGAGAGAATCATCAAAGGGAGTCTGAGTTACAGTCCCTGGATCAATAATCAATTAGCCACAAGTTGGAGAGGCAAGGAGAGTGTGAAGAAGGCCAAACCTGGTGTTGTGTCTGCTGTTCTTACATCAAATGATACCAAGGAATCCTTGAGCATTCAAGTGCCAACCTTTCTCAGAAGAAAGGCAGACCCTAAAAATGTTGTTTCCATCATATTGGGAGAACGTCCTGGGATTCAACTCCTTCCTCTTACCAAACGAGCTGCAACACCTGCTGTCCCTGTTGGTGGATGCTACAGGCTTATAGACATCCCAACGAGCAACTGCATTAACAGTGGCATCAACAAAGTATTTGTGTTGACCCAGTTCAACTCTGCATCTCTCAACCGTCACATCTCCCGCACCTATTTCGGAAATGGCATCAATTTTGGGGATGGATGTGTGGAGGTTCTAGCGGCCACCCAAACACCAGGAGAAGCTGGCAAGAATTGGTTCCAAGGCACTGCAGATGCTGTGAGGCAATTCACTTGGGTATTTGAGGATGCCAAGCACACAAACATTGAGAATGTGTTGATCTTGGCAGGAGATCATCTATACCGTATGGATTACATGGACCTTGTGCAGAGTCATGTAGACAGAAATGCAGATATTACAGTATCATGTGCTGCAGTGGATGACAGTCGAGCATCAGATTATGGATTGGTCAAGGTAGATGGCAGAGGCCGCATCATCCAATTTTCAGAAAAACCGAAGGGTTCTGATCTGAAAGAAATGCAAGTAGATACCTCTCTTTTTGGCTTGTCACCTCAAGAAGCATTAAAGTCACCATATATTGCATCTATGGGGGTTTATGTATTCAAGACGGATGTTTTACTTAACCTTCTAAAATGGAGATATCCTACTTCGAATGACTTTGGATCTGAAATCATTCCTGCAGCTGTGAAGGAATACAATGTCCAAGGTTACTTTTTTGGTGACTATTGGGAAGACATTGGAACAATAAAATCGTTTTACGATGCTAACATGGCTCTTACTGAAGAGAATCCAATGTTCAAATTTTATGATCCCAAGACGCCCATTTACACATCTCCAAGATTCTTGCCACCAACAAAGATTGATAAATGCCGGATTGTGGATGCAATAATTTCCCATGGATGTTTCCTGAGAGAAAGTAGTGTCCAACACTCCATTGTGGGTGAACGTTCACGTTTGGATTATGGCGTTGAGCTCCGGGACACTATAATGATGGGAGCAGACTATTACCAAACTGAATCCGAAATCGCTTCCCTGCTAGCAGAGGGGAAGGTTCCCATTGGGATCGGAAAGAACACCAAAATTAGGAAATGTATAATTGACAAGAATGCAAAGATTGGGAAAGATGTCATCATCATGAACAAAGATGGTGTGCAAGAAGCAGATAGAGCAGAGGATGGATTCTACATTAGATCAGGAATCCCTATCATAATGGAGAAGGCAACAATAGAAGATGGAAGAGTGATATAA 1593 0.4281 MVSAACVAWTTSSQLAKSKKDSTFLQDDGFLGERIIKGSLSYSPWINNQLATSWRGKESVKKAKPGVVSAVLTSNDTKESLSIQVPTFLRRKADPKNVVSIILGERPGIQLLPLTKRAATPAVPVGGCYRLIDIPTSNCINSGINKVFVLTQFNSASLNRHISRTYFGNGINFGDGCVEVLAATQTPGEAGKNWFQGTADAVRQFTWVFEDAKHTNIENVLILAGDHLYRMDYMDLVQSHVDRNADITVSCAAVDDSRASDYGLVKVDGRGRIIQFSEKPKGSDLKEMQVDTSLFGLSPQEALKSPYIASMGVYVFKTDVLLNLLKWRYPTSNDFGSEIIPAAVKEYNVQGYFFGDYWEDIGTIKSFYDANMALTEENPMFKFYDPKTPIYTSPRFLPPTKIDKCRIVDAIISHGCFLRESSVQHSIVGERSRLDYGVELRDTIMMGADYYQTESEIASLLAEGKVPIGIGKNTKIRKCIIDKNAKIGKDVIIMNKDGVQEADRAEDGFYIRSGIPIIMEKATIEDGRVI* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0494 530 CDD LbH_G1P_AT_C 398 524 - -
Lja3g0494 530 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 84 395 IPR029044 -
Lja3g0494 530 Pfam Nucleotidyl transferase 101 376 IPR005835 GO:0009058|GO:0016779
Lja3g0494 530 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 4 530 IPR011831 GO:0005978|GO:0008878
Lja3g0494 530 TIGRFAM glgC: glucose-1-phosphate adenylyltransferase 98 494 IPR011831 GO:0005978|GO:0008878
Lja3g0494 530 CDD ADP_Glucose_PP 101 361 - -
Lja3g0494 530 SUPERFAMILY Nucleotide-diphospho-sugar transferases 105 491 IPR029044 -
Lja3g0494 530 Gene3D Hexapeptide repeat proteins 396 530 - -
Lja3g0494 530 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 194 202 IPR005836 GO:0005978|GO:0008878
Lja3g0494 530 ProSitePatterns ADP-glucose pyrophosphorylase signature 3. 309 319 IPR005836 GO:0005978|GO:0008878
Lja3g0494 530 SUPERFAMILY Trimeric LpxA-like enzymes 392 530 IPR011004 -
Lja3g0494 530 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE LARGE SUBUNIT 3, CHLOROPLASTIC 4 530 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0494 Lja-Chr3 4974243 4979782 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0494 K00975 - gmx:100808791 933.71