Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0481 ATGGCCAGTGACTCTCTTGTGATCTCCAATGGCCATGACAATGGCAATTTAGAGCTGAGTCCACAGAGGACTTACCAAGCTGTAGTGATTGCGACCCCGGACATGGGCATTTCCAAAGATGGAAAATTGCCCTGGGCATTGCCTACTGATCAAAAGTTTTTTGAGGAGATCACTACAAAAACATCTGATCCTGGGAAGAAGAATGCTGTTGTCATGGGTAGGAAATCATGGGAGGCCATCCCTCCTGAGAAAAGGCCTCTCTGTGGTCGCCTTAATGTTGTGCTGACTCGCTCGGGTAGCTTTGATATTGCAACAGCGGAGAATGTTGTTATTTGTGGAAGTGTGTCTTCTGCCATGGAACTGTTAGCTTCTTCTCCTTACAGCATGTCAATTGAGAAAGTGTTTCTTACCGGAGGTGGCGAGATTTTTAGAGAGGCTCTTAATGCTCCTGGATGTGAAGCTGTCCATATTACAGAAATTGAAGCAAGCATCGAGTGTGACACTTTCATGCCTCGAGTTGATTTCTCTGTATTTCATCCATGGTACTCATCTTTTCCTTTGGTGGAAAACAACATCCGCTATTCTTTCAACACCTATGTGCGTGTAAGGAGTTCTGCAGAAGAATCCCTTGGTCAGAATACTGATCCAAGTTTTGATAGTGATTCAGACTCTCTAAAATTTGAGGTCAAGAAATTTTCTTTTCTTCCTAAAATGATTTTTGAGAGTCATGAGGAGTACAAGTATCTTAGGTTGGTTCAAGAAATCATTTCTGAAGGTACAGTTAAGGATGACAGGACTGGGACTGGTACCTTGTCAAAATTTGGTTGCCAGATGAGGTTTAATCTCCGCAGAAGCTTTCCACTTCTAACAACTAAGAAAGTATTTTGGCGAGGGGTTGTTGAAGAGCTTCTTTGGTTTATCAGTGGCTCAACGAGTGCCAAGGTGCTGCAAGAAAAAGGCATTCATATATGGGATGGCAATGCATCCAGGGAATACCTTGATAGCATTGGTTTGACAGAAAGGGAGGAGGGTGACTTAGGGCCTGTCTATGGGTTTCAGTGGAGGCACTTTGGCGCTAGGTATACTAACATGCATGATGACTACTCCGGCAAAGGATTTGATCAGCTTTTAGATGTTATTAACAAGATAAAGCATAATCCTGATGATCGACGGATCATTCTCTCAGCTTGGAATCCATCTGATCTTAAGTTGATGGCACTTCCTCCTTGCCACATGTTTGCGCAGTTCTATGTAGCAAATGGGGAGTTGTCATGTCAAATGTATCAGCGATCTGCGGATATGGGCCTGGGCGTGCCATTTAATATTGCATCTTATGCGCTCTTGACATGCATGATTGCTCATGTTTGTGACCTAGTTCCGGGTGATTTTATCCATGTTATTGGGGATGCACATGTTTACCGCAATCATGTGAAGCCTTTGCAGGAACAGCTCCAGAACCTGCCAAGACCTTTTCCGATTTTGAAGATAAATCCAAAGAAGAAAGATATAGATTCTTTTGAGGCTACTGATTTCAAGCTCATAGGCTATGATCCTCACCAGAAGATCCAAATGAAGATGGCTGTTTAG 1587 0.4323 MASDSLVISNGHDNGNLELSPQRTYQAVVIATPDMGISKDGKLPWALPTDQKFFEEITTKTSDPGKKNAVVMGRKSWEAIPPEKRPLCGRLNVVLTRSGSFDIATAENVVICGSVSSAMELLASSPYSMSIEKVFLTGGGEIFREALNAPGCEAVHITEIEASIECDTFMPRVDFSVFHPWYSSFPLVENNIRYSFNTYVRVRSSAEESLGQNTDPSFDSDSDSLKFEVKKFSFLPKMIFESHEEYKYLRLVQEIISEGTVKDDRTGTGTLSKFGCQMRFNLRRSFPLLTTKKVFWRGVVEELLWFISGSTSAKVLQEKGIHIWDGNASREYLDSIGLTEREEGDLGPVYGFQWRHFGARYTNMHDDYSGKGFDQLLDVINKIKHNPDDRRIILSAWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLVPGDFIHVIGDAHVYRNHVKPLQEQLQNLPRPFPILKINPKKKDIDSFEATDFKLIGYDPHQKIQMKMAV* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0481 528 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 237 528 IPR036926 -
Lja3g0481 528 Pfam Thymidylate synthase 247 528 IPR023451 -
Lja3g0481 528 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 226 528 IPR036926 -
Lja3g0481 528 ProSitePatterns Thymidylate synthase active site. 390 418 IPR020940 GO:0004799|GO:0006231
Lja3g0481 528 CDD TS_Pyrimidine_HMase 248 481 IPR023451 -
Lja3g0481 528 CDD DHFR 27 200 IPR001796 GO:0004146|GO:0046654
Lja3g0481 528 Hamap Thymidylate synthase [thyA]. 245 528 IPR000398 GO:0004799|GO:0006231
Lja3g0481 528 Pfam Dihydrofolate reductase 27 201 IPR001796 GO:0004146|GO:0046654
Lja3g0481 528 PRINTS Thymidylate synthase family signature 286 307 IPR000398 GO:0004799|GO:0006231
Lja3g0481 528 PRINTS Thymidylate synthase family signature 379 398 IPR000398 GO:0004799|GO:0006231
Lja3g0481 528 PRINTS Thymidylate synthase family signature 405 420 IPR000398 GO:0004799|GO:0006231
Lja3g0481 528 PRINTS Thymidylate synthase family signature 423 449 IPR000398 GO:0004799|GO:0006231
Lja3g0481 528 PRINTS Thymidylate synthase family signature 461 478 IPR000398 GO:0004799|GO:0006231
Lja3g0481 528 SUPERFAMILY Dihydrofolate reductase-like 26 201 IPR024072 -
Lja3g0481 528 PANTHER THYMIDYLATE SYNTHASE 1 1 528 IPR045097 GO:0016741
Lja3g0481 528 PANTHER BIFUNCTIONAL DIHYDROFOLATE REDUCTASE-THYMIDYLATE SYNTHASE 1 528 - -
Lja3g0481 528 PIRSF DHFR-TS 7 528 IPR012262 GO:0004146|GO:0004799|GO:0006730
Lja3g0481 528 TIGRFAM thym_sym: thymidylate synthase 247 528 IPR000398 GO:0004799|GO:0006231
Lja3g0481 528 Gene3D Dihydrofolate Reductase, subunit A 7 203 IPR024072 -
Lja3g0481 528 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 24 201 IPR001796 GO:0004146|GO:0046654
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0481 Lja-Chr3 4861600 4866447 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0481 K13998 - gmx:100786311 965.681