Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0480 ATGTGTGACACTATGTCCGTACCTAGTACAGATCAACCTGTTAAAGGTCTTGAGATGGAATATTTAGAGGATGAAAAGAAGACCAGGCTTGGTTCTCTAAAGAAGGTAGCAATCAGTGCATCTTCTAAGTTCAAAAACTCCTTGACAAAGAAGGGGAGAAAGCACTGCAGGGTTATGTCTATTGCTATTGAGGATGAACTTGATTTAGAAGAGTTACAAGCAGTTGATGCTTTTCGCCAAGCTCTTACCCTGGAAGAGCTATTACCCTCTAAACATGATGATGATCACATGATGCTAAGATTCTTGAGAGCAAGGAAGTTTGACATTGAGAAAGCAAAACAAATGTGGGCAGATATGCTCCAGTGGAGAAGGGAATTTGGTGCTGATACCATCATGGAGGATTTTGAGTTCCAGGAGATAGATGAAGTTATAAAATACTACCCTCAAGGACATCACGGAACTGACAAGGATGGAAGACCTGTTTACATAGAAAGGTTAGGTCAGGTTGACTCTCACAAGCTGATGCAAGTCACCACCATGGATCGCTATCTTAAGTACCATGTAAGAGAGTTTGAGAGGACTTTTGCTGTTAAGTTGCCTGCTTGTTCAATCGCAGCAAAGAAGCACATTGACCAAAGTACCACTATCTTGGATGTGCAAGGAGTGGGTCTCAAAAGTTTGAATAAAGCTGCAAGGGATCTCATCCAGATGCTTCAAAAGGTTGATGGTGATAACTATCCTGAGTCCCTGAACCGTATGTTCATCATCAATGCTGGTTCTGGATTCCGGCTGCTGTGGAACACTATCAAGAGTTTCCTTGACCCCAAGACCACTTCAAAAATCCATGTCCTAGGGAACAAATACCAGAGTAAGTTGCTTGAGATCATTGATGCCAGTGAACTTCCAGAGTTCTTGGGAGGTACTTGTACTTGTGCAGACAAAGGTGGTTGTATGCTTTCTGATAAGGGACCATGGAATGACCCTGAAATCTTCAAGATGGTTCAAAATGGTCAAGGCAAATGCAAAAGGAAAACCTTATCTGGGATTGAGGAAAAAACAATGATTGAAGATGACACAACATATGAAAAGGAATGCATGCCAAAAGTGGAGCATCCAGAATGTTATGCTGTTCCAGAAGTTGCAAAACAATGTAATGTATATCAGTGTGATGCCTTTGTCCCAGTGATTGGTAATTCAGTCTCTTGGAAGAAAGCAGTACAAAATGATAAATTGGCACTTTCTCAAGATTGTAAGACTGGGTTAACAACTCAATTTGCTGGTGGAATCATGGCTGTGGTGATGGGATTCATAACATTCATCCGTTTGACGCGGAACATGCCAAGGAAAATCACAGAAGTTGCCTTGTATGGCAGCTCTGTATATTATGATGGCAACATGATGAAAGCACCAGCAATTTCCATTGATGAACATATGGCCTTGATGAAGCGCATGGCTGAACTAGAAGAGAAGGTGAATGCCCTCAGCATGAGACCTTCCATGCCACCAGAAAAGGAGGAAATGCTGAATAATGCTCTAAGCCGAGTATGTACTCTGGAAGAAGACTTGGCTACAGCCAAAAAGGCACTTGATGATGCCTTTGTTAAACAAGTGGAGCTCCAAGCTCTTGTTGACAAAAAGAAAAAGAAGAAGCTGGTAGGCTATTGTTTTTTCTTTTATAGTAACTAG 1686 0.4164 MCDTMSVPSTDQPVKGLEMEYLEDEKKTRLGSLKKVAISASSKFKNSLTKKGRKHCRVMSIAIEDELDLEELQAVDAFRQALTLEELLPSKHDDDHMMLRFLRARKFDIEKAKQMWADMLQWRREFGADTIMEDFEFQEIDEVIKYYPQGHHGTDKDGRPVYIERLGQVDSHKLMQVTTMDRYLKYHVREFERTFAVKLPACSIAAKKHIDQSTTILDVQGVGLKSLNKAARDLIQMLQKVDGDNYPESLNRMFIINAGSGFRLLWNTIKSFLDPKTTSKIHVLGNKYQSKLLEIIDASELPEFLGGTCTCADKGGCMLSDKGPWNDPEIFKMVQNGQGKCKRKTLSGIEEKTMIEDDTTYEKECMPKVEHPECYAVPEVAKQCNVYQCDAFVPVIGNSVSWKKAVQNDKLALSQDCKTGLTTQFAGGIMAVVMGFITFIRLTRNMPRKITEVALYGSSVYYDGNMMKAPAISIDEHMALMKRMAELEEKVNALSMRPSMPPEKEEMLNNALSRVCTLEEDLATAKKALDDAFVKQVELQALVDKKKKKKLVGYCFFFYSN* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0480 561 Pfam CRAL/TRIO, N-terminal domain 82 118 IPR011074 -
Lja3g0480 561 SMART CRAL_TRIO_N_2 94 119 IPR011074 -
Lja3g0480 561 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 139 313 IPR001251 -
Lja3g0480 561 Gene3D - 127 339 IPR036865 -
Lja3g0480 561 PRINTS Cellular retinaldehyde-binding protein signature 299 308 - -
Lja3g0480 561 PRINTS Cellular retinaldehyde-binding protein signature 97 119 - -
Lja3g0480 561 PRINTS Cellular retinaldehyde-binding protein signature 266 285 - -
Lja3g0480 561 SUPERFAMILY CRAL/TRIO N-terminal domain 64 135 IPR036273 -
Lja3g0480 561 SMART sec14_4 139 310 IPR001251 -
Lja3g0480 561 Coils Coil 477 497 - -
Lja3g0480 561 SUPERFAMILY CRAL/TRIO domain 139 335 IPR036865 -
Lja3g0480 561 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 7 551 - -
Lja3g0480 561 PANTHER SEC14P-LIKE PHOSPHATIDYLINOSITOL TRANSFER FAMILY PROTEIN 7 551 - -
Lja3g0480 561 CDD SEC14 140 308 IPR001251 -
Lja3g0480 561 Pfam CRAL/TRIO domain 145 307 IPR001251 -
Lja3g0480 561 Gene3D - 60 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0480 Lja-Chr3 4846040 4852167 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0480 73 304 Acyl Lipid Metabolism Gene Families AT5G47730 27.801 2.85e-21 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0480 - - lja:Lj3g3v3363570.1 993.03