Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0479 ATGTACCTTTGCTCCGACATTCACCACCGTTGCACAATGTCCGGCCCGCTCGACCGTTTCGCCAGACCTTGCTTTGAGGGATTCTACGGTAGTGATGAGAGAAAAGAGAGGAAGTCTGATTTTGAGAACTCTGAGGATGAAAGGAGGACCAGAATTGGATCTCTCAAGAAGAAGGCCCTCAATGCATCTTCCAAGTTCAAGCACTCTTTGAAGAAAAAGAGCAGCAGGAGGAAAAGTGACGGGCGGGTTAGCTCTGTTTCCATTGAGGATGTTCGGGATGTTGAGGAGTTGCAGGCTGTTGATGCCTTTCGCCAATCGTTGATTATCGATGAATTGCTTCCGGAAAGACATGATGATTACCACATCATGTTAAGATTTCTGAAAGCAAGGAAGTTTGATGTTGAAAAAGCAAAGCATATGTGGGCCGATATGCTACGATGGAGGAAGGAGTTTGGCGCCGACACTATTATGGAGGATTTTGAGTTCAAAGAATTAAGCGAAGTTGTAAAATACTATCCACATGGCCATCATGGTGTTGATAAGGAAGGAAGACCTGTTTACATTGAAAGGCTTGGAAAAGTGGATGCAAACAAACTTATGGAAGCCACTACTATGGATAGATATGTAAAGTACCACGTACAAGAGTTTGAGAAATCTTTTGCGATAAAGTTTCCTGCCTGCACAATTGCTGCCAAAAGGCACATAGAATCGAGCACTACGATCTTAGATGTTCAAGGCGTGGGCCTTAAGAACTTTTCAAAGTCTGCCCGGGAACTCATGATGCGATTACAAAAAATTGATGGCGACAATTACCCTGAGACTCTCTGCCAAATGTTTATCATAAATGCTGGCCATGGGTTTAGGTTGCTGTGGAACACTGTCAAGTCTTTTCTTGATCCTAAAACAACTTCAAAGATTCATGTTCTTGGAAACAAGTACCAAAGCAAACTGCTCGAAATAATCGATTCCAGTGAGTTGCCAGAGTTTCTTGGAGGAACCTGTACCTGTGCAGATCAGGGAGGTTGCCTCAGATCCGATAAAGGGCCCTGGAAAAACCCTGAAATCTTGAAGATAATTCTCAGTGGTGAAGCAAGGCGGGCAAGGCAGGTAGTAAAAGTTCTAAACAGTGAAGGAAAGGTTATTGCATATGCAAAACCGCGTTGCCCAATGATAAAAGGCAGTGATACATCAACAGCTGAATCAGGGTCTGAAACTGAAGATATAGCTTCTCCGAAAACAATGAAGAGTTACTCGCACCTTAGGTTGACCCCTGTTCGTGAGGAAGCTAAGGTTGTTGGAAAGTCAAACTATGCTGGTAGTGGCAACTTGGCAGGGTATGACGAATACATTCCGATGGTGGACAAAGCCGTTGATGCTGGCTGGAAGAAGCAAGCATTACTCCAGATCCAGAGGTCTCATAGTACAAAAGGAACACCTCCCCTTCCTGACACTCCAAAGGCTCCAGAAGGGATTCAAGCTCGGATTTGGGTAGCCGTGACCTTTTTCTTTTTAACCCTGTGGACTCTCTTCCTCTCAGTTGCATGTCGTGTGACCAAGAAACTCCCTACAGTATCATCTACTGATTATCTGAGAACTTCAGAGCCAACTCTTGATACAACAAATAAGGAAGACTCTGGTTCTTCTTCACTGACTGCAGCACATACTGAGGCAGATCTCCTATCCTCCATGATGAAAAGGTTAGGTGAGCTTGAAGAGAAGGTTGAAACTCTCCAATCTAAGCCATCGGAGATGCCTAATGAGAAAGAGGAATTGCTAAATGCTGCTGTCTGCCGGGTGGATGCTTTGGAAGCAGAGCTAATTGCAACTAAAAAGGCTCTCTATGGAGCTTTAATGAGGCAAGAAGAGCTGCTTGCTTACATTGATCGCCAAGAAGAAGCTAAGCTACGGAAAAAGAAGTTTTGCTGGTGA 1929 0.4438 MYLCSDIHHRCTMSGPLDRFARPCFEGFYGSDERKERKSDFENSEDERRTRIGSLKKKALNASSKFKHSLKKKSSRRKSDGRVSSVSIEDVRDVEELQAVDAFRQSLIIDELLPERHDDYHIMLRFLKARKFDVEKAKHMWADMLRWRKEFGADTIMEDFEFKELSEVVKYYPHGHHGVDKEGRPVYIERLGKVDANKLMEATTMDRYVKYHVQEFEKSFAIKFPACTIAAKRHIESSTTILDVQGVGLKNFSKSARELMMRLQKIDGDNYPETLCQMFIINAGHGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDSSELPEFLGGTCTCADQGGCLRSDKGPWKNPEILKIILSGEARRARQVVKVLNSEGKVIAYAKPRCPMIKGSDTSTAESGSETEDIASPKTMKSYSHLRLTPVREEAKVVGKSNYAGSGNLAGYDEYIPMVDKAVDAGWKKQALLQIQRSHSTKGTPPLPDTPKAPEGIQARIWVAVTFFFLTLWTLFLSVACRVTKKLPTVSSTDYLRTSEPTLDTTNKEDSGSSSLTAAHTEADLLSSMMKRLGELEEKVETLQSKPSEMPNEKEELLNAAVCRVDALEAELIATKKALYGALMRQEELLAYIDRQEEAKLRKKKFCW* 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0479 642 Coils Coil 560 580 - -
Lja3g0479 642 SUPERFAMILY CRAL/TRIO domain 164 357 IPR036865 -
Lja3g0479 642 SUPERFAMILY CRAL/TRIO N-terminal domain 94 160 IPR036273 -
Lja3g0479 642 SMART sec14_4 164 335 IPR001251 -
Lja3g0479 642 PRINTS Cellular retinaldehyde-binding protein signature 291 310 - -
Lja3g0479 642 PRINTS Cellular retinaldehyde-binding protein signature 122 144 - -
Lja3g0479 642 PRINTS Cellular retinaldehyde-binding protein signature 324 333 - -
Lja3g0479 642 Gene3D - 88 151 - -
Lja3g0479 642 Pfam CRAL/TRIO domain 171 332 IPR001251 -
Lja3g0479 642 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH8 15 639 - -
Lja3g0479 642 Gene3D - 152 361 IPR036865 -
Lja3g0479 642 MobiDBLite consensus disorder prediction 61 78 - -
Lja3g0479 642 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 164 338 IPR001251 -
Lja3g0479 642 MobiDBLite consensus disorder prediction 531 551 - -
Lja3g0479 642 CDD SEC14 162 333 IPR001251 -
Lja3g0479 642 MobiDBLite consensus disorder prediction 32 54 - -
Lja3g0479 642 MobiDBLite consensus disorder prediction 32 82 - -
Lja3g0479 642 Pfam CRAL/TRIO, N-terminal domain 116 143 IPR011074 -
Lja3g0479 642 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 15 639 - -
Lja3g0479 642 SMART CRAL_TRIO_N_2 119 144 IPR011074 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0479 Lja-Chr3 4840333 4845477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0479 98 329 Acyl Lipid Metabolism Gene Families AT5G47730 29.268 8.19e-22 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0479 - - gmx:100785793 1046.57