Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0475 ATGCTTGTTCTGTTTGAAACACCTGCGGGTTTTGCCCTATTCAAAGTTCTGGATGAAGGCAAACTCTCTAAAGTTGAGGACTTGTGGAAGGATTTCTCAAGTGCAGACAAGGCTAGACAGGTGGTCAAGCTGAAAGCCTTTTCTAAGTTTGAGAATACTTCAGAAGCTCTAGAGGCAGCTACTTTGCTGATTGATGGAAAAGCTAGCAAGGGTCTGCGCAAGTTCCTTCGCGCTCATTGCGAAGATGAGATGTTAGCTGTTGCTGATTCAAAGCTCGGGAACATGATTAAGGAGAAATTGAAAATTGATTGTGTTCACAACAATGCTGTTATGGAGTTGATGAGAGGGGTTAGAAATCAGTTAAATGAACTCATATCTGGTCTTGCTGTTCAAGACATGGCCCCAATGAGCTTGGGTTTGTCTCATAGCTTATCCAGATACAAGCTCAAGTTTAGCGCAGAAAAGGTCGACACCATGGTTGTTCAGGCTATAGGCTTACTTGATGATCTTGATAAGGAGTTGAATACATACGCCATGAGGGTTCGAGAATGGTATGGTTGGCATTTTCCAGAGCTTACCAAAATCATTCAGGATAACATCCAATATGCTAAGGCAGTCAAATTGATGGGTGATCGTGTTAATGCTGCACAGACTGATTTCTCTGAGACTTTGCCAGAAGAGGTTGAGGAGGAGGTGAAGGAAGCGTCTGTGATATCTATGGGAACTGAAATTGGTGAGCTTGATTTGATGAATATTAAGGAGCTTTGTGACCAGGTTTTGTCTCTTTCAGAATATAGAGCTCAACTCTATGATTATCTGAAGAGTAGGATGAACTCCATTGCACCCAATTTGACTGCTCTTGTTGGGGAGCTTGTTGGTGCCCGCCTCATTGCCCATGGTGGCAGCTTAATAAATCTGGCAAAGCAGCCTGGTAGTACTGTGCAGATTCTTGGTGCTGAGAAGGCTCTCTTTAGGGCACTTAAGACCAAGCATGCTACTCCCAAGTATGGTCTTATATACCATGCATCCTTGATTGGTCAGGCAGCTCCAAAGCTTAAGGGGAAAATTTCCCGGTCACTTGCTGCAAAGGCAGCATTGGCTATCAGGTGCGATGCACTTGGAGATGTTGTAGATAACACCATGGGATTGGAAAACAGAGCCAAGCTTGAATTACGATTGAGGAATCTTGAAGGAAAGGAATTAGGTCGTTTCGCTGGTTCTGCTAAAGGGAAGCCTAAGATAGAAGCATATGACAAGGATCGAAAGAAAGGAGCCGGAGGACTGATTACCCCAGCTAAGACATATAATCCTTCAGCTGATGCTGTTATTTCACAAAAATCTGATTCTGCAATGGATGAAGATACACATGAGCCTTCTGCTGATAAAAAGAAGGAAAAGAAAGAAAAGAAGAAGAAGAAAGAGAAAAATGAAGAGAAGGATGTGCCTTTGCTGGCTGATGAAGATGGTGATGAGGAAAAAGAAGTTGTGAAAAAGGAAAAGAAGAAAAAGAGGAAGGAATCTACTGAGAATGTTGAGTTGCAGAATGGGGACGATGCAGGAGAAAAGAAGAAAAAGAGGAAAAAGCATGCAGAGCCGGAAGAGTCAGCTGAAATGCCAAGCAAAAAGAAAGGAAAAAAGAAGAAAAGCGAGGACTGA 1656 0.4287 MLVLFETPAGFALFKVLDEGKLSKVEDLWKDFSSADKARQVVKLKAFSKFENTSEALEAATLLIDGKASKGLRKFLRAHCEDEMLAVADSKLGNMIKEKLKIDCVHNNAVMELMRGVRNQLNELISGLAVQDMAPMSLGLSHSLSRYKLKFSAEKVDTMVVQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIIQDNIQYAKAVKLMGDRVNAAQTDFSETLPEEVEEEVKEASVISMGTEIGELDLMNIKELCDQVLSLSEYRAQLYDYLKSRMNSIAPNLTALVGELVGARLIAHGGSLINLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLIGQAAPKLKGKISRSLAAKAALAIRCDALGDVVDNTMGLENRAKLELRLRNLEGKELGRFAGSAKGKPKIEAYDKDRKKGAGGLITPAKTYNPSADAVISQKSDSAMDEDTHEPSADKKKEKKEKKKKKEKNEEKDVPLLADEDGDEEKEVVKKEKKKKRKESTENVELQNGDDAGEKKKKRKKHAEPEESAEMPSKKKGKKKKSED* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0475 551 PANTHER NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58 1 550 IPR045056 GO:0030515|GO:0031428|GO:0032040
Lja3g0475 551 SMART NOSIC_2 159 211 IPR012976 -
Lja3g0475 551 PANTHER PROTEIN NOP56, PUTATIVE-RELATED 1 550 - -
Lja3g0475 551 ProSiteProfiles Nop domain profile. 280 398 IPR002687 -
Lja3g0475 551 Gene3D - 129 284 - -
Lja3g0475 551 MobiDBLite consensus disorder prediction 447 464 - -
Lja3g0475 551 Coils Coil 459 480 - -
Lja3g0475 551 MobiDBLite consensus disorder prediction 490 551 - -
Lja3g0475 551 Gene3D Nop domain 285 397 IPR042239 -
Lja3g0475 551 Pfam NOP5NT (NUC127) domain 2 66 IPR012974 -
Lja3g0475 551 SUPERFAMILY Nop domain 153 397 IPR036070 -
Lja3g0475 551 MobiDBLite consensus disorder prediction 410 551 - -
Lja3g0475 551 Pfam snoRNA binding domain, fibrillarin 166 394 IPR002687 -
Lja3g0475 551 MobiDBLite consensus disorder prediction 412 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0475 Lja-Chr3 4784377 4788357 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0475 K14565 - gmx:100775301 856.67