Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0457 ATGGCTCCTCTGAACCCAAACGCTGCAGACTACTTCCCTCACCACCACCACCAAAGAAAACTCCACAACCACCACCAAATCACCATGTCCCTTCCCCATTACCACACTTCTCAACACCACCGCTTCTTCACACTCTCTGCAACTCAACACTTTGTGTTCTACCCACACACCACCACCGCACTTCCATTTTCGCACCCTTCTACTTTCCAGAGCCAGCACCACCAACTCAGCACTTACACTGTGTCGCCACAACCGTTACCATGTGAAGCTGAACCGGTTCGTTTCCTCAACAAACCGTTTCAACAACATGGCCCTTCGGAACTTGATGGTTACAACAACAACAAGAAGCAAGCGTTTTTGCAGAAGCCGGCTCGGAGATCGGAGCACCGCCGTTCAGAGAGGTTGAGACAGACGAGGAGGTTCGAGGGCCGAGGAGAGATTGCTCCGGAAAACAAGAAATGGCGTCCTTTAATCCGGCCTCACAGAGATCAAACCACTGTGATGATCAAAAACATTCCTGTTAAATACACTCGGGATATGCTGATCAAGTTTCTTGATGATCATTGCATGAGGGAAAATGGAAGGGGCAATGGGAATGTGGAAGGAAATGTGTTCGCTTTTGACTGTGTTTATTTGCCTATGGATTTCAGAACTGGAATGAACAAGGGGTATGCCTTTGTAAATTTCACCAATTCCGAGGCTGCTTTGAAGTTTACCCAGACAACCTCCAATCAAAAGTGGGATTTGTTTCAATCTCTTAAGATCCGTGAAGTTGTACCTGCACGTCTCCAGCCGTGCAAAACTTATTGGAGCCTCACAGCAAAGGACACATCGGGTGGAGGATGTGATTTGGTGCTTACTGAGTTTCTCTTCAATGATCTTGGAGGCAGCGTTTGGTATGCATTTTGCTAG 912 0.4759 MAPLNPNAADYFPHHHHQRKLHNHHQITMSLPHYHTSQHHRFFTLSATQHFVFYPHTTTALPFSHPSTFQSQHHQLSTYTVSPQPLPCEAEPVRFLNKPFQQHGPSELDGYNNNKKQAFLQKPARRSEHRRSERLRQTRRFEGRGEIAPENKKWRPLIRPHRDQTTVMIKNIPVKYTRDMLIKFLDDHCMRENGRGNGNVEGNVFAFDCVYLPMDFRTGMNKGYAFVNFTNSEAALKFTQTTSNQKWDLFQSLKIREVVPARLQPCKTYWSLTAKDTSGGGCDLVLTEFLFNDLGGSVWYAFC* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0457 303 MobiDBLite consensus disorder prediction 1 24 - -
Lja3g0457 303 Pfam RNA recognition motif 2 165 265 IPR007201 -
Lja3g0457 303 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 165 260 IPR000504 GO:0003723
Lja3g0457 303 CDD RRM3_MEI2_EAR1_like 167 264 - -
Lja3g0457 303 SUPERFAMILY RNA-binding domain, RBD 126 247 IPR035979 GO:0003676
Lja3g0457 303 Gene3D - 104 262 IPR012677 -
Lja3g0457 303 PANTHER RNA BINDING PROTEIN 5 264 - -
Lja3g0457 303 PANTHER MEI2 C-TERMINAL RRM ONLY LIKE 1 5 264 - -
Lja3g0457 303 SMART rrm1_1 166 256 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0457 Lja-Chr3 4647884 4652404 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0457 - - lja:Lj3g3v3376230.1 236.113