Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0447 ATGGATGCAATCAGAAAGCAAGCTTCCAAGCTTCGTGAACAAGTCGCTCGCCAACAACAGGCTGTGCTGAAGCAGTTTGGGGGTGGCGGTTATGGAGGTTCGGATAATGTGGTTACCGATGAGAGAGAGCTACACTTACACCAGAAACTCGAGAAACTTTACATTTCGACGCGGGCGGGGAAGCATTATCAAAGGGATATTGTGCGCGGTGTAGAAGGTTATATTGTTACGGGGTCGAAGCAAGTTGAAATAGGAACAAAGTTTTCAGAAGATAGCAGGAAATATGGTGCGGAAAATACATGTACCAGTGGTAGTACATTGAGCAGAGCTGCACTGAGTTATGCACGAGCCCGTGCCCAAATGGAGAAGGAGCGCGGAAACTTACTAAAAGCTCTCGGTACACAGGTTGCAGAGCCCTTAAGGGCAATGGTGGTGGGAGCTCCATTGGAGGATGCCCGACATCTTGCTCAACGTTACGATAGAATGCGACAGGAAGCTGAAGCCCAGGCTATTGAAGTTTCTAAACGCCAGGCAAAAGTAAGAGAAATGCCAGGCAATGCAGAGAATGCTATGAAATTAGAAGCAGCTGAAGCAAAGCTACAAGACCTGAAGACAAACATGAACATATTGGGGAAGGAAGCAGCGGCAGCATTGTCTGCTGTTGAAGCACAGCAACAAAGATTAACTCTTCAGCGCCTTATAGCTATGGTTGAGGCGGAGCGTGCCTATCATCAGATAGTCTTACAAATTCTTGATCAGCTTGAGGGAGAGATGATATCAGAACGACAGCGAATTGAAGCCCCTCCTACTCCTAGTGTGGATCACAGCATGCCGCCGCCCCCATCATATGAAGAAGTGAATGATGTCTTTGCTTCTCAGGCACATAATGGAACAACAGATAGCATGGGTTACTTCTTAGGAGAGGTTTTATTTCCATACTCTGCTGTGTCTGAAGTGGAGTTGAATCTATCAGTTGGTGATTATGTTGTTGTACGAAAGGTGTCAAACAGCGGATGGGCCGAGGGTGAATGCAAAGGGAGAGCAGGTTGGTTTCCATTTAGTTACATTGAAAGAAGGGAGCGGGTTCTGGCAAGCAAGGTGGCCGAAGTGTTTTGA 1116 0.4713 MDAIRKQASKLREQVARQQQAVLKQFGGGGYGGSDNVVTDERELHLHQKLEKLYISTRAGKHYQRDIVRGVEGYIVTGSKQVEIGTKFSEDSRKYGAENTCTSGSTLSRAALSYARARAQMEKERGNLLKALGTQVAEPLRAMVVGAPLEDARHLAQRYDRMRQEAEAQAIEVSKRQAKVREMPGNAENAMKLEAAEAKLQDLKTNMNILGKEAAAALSAVEAQQQRLTLQRLIAMVEAERAYHQIVLQILDQLEGEMISERQRIEAPPTPSVDHSMPPPPSYEEVNDVFASQAHNGTTDSMGYFLGEVLFPYSAVSEVELNLSVGDYVVVRKVSNSGWAEGECKGRAGWFPFSYIERRERVLASKVAEVF* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0447 371 ProSiteProfiles Src homology 3 (SH3) domain profile. 302 361 IPR001452 GO:0005515
Lja3g0447 371 PANTHER PROTEIN, PUTATIVE-RELATED 1 371 - -
Lja3g0447 371 SMART SH3_2 305 360 IPR001452 GO:0005515
Lja3g0447 371 Coils Coil 149 176 - -
Lja3g0447 371 Coils Coil 1 21 - -
Lja3g0447 371 Pfam Variant SH3 domain 309 357 IPR001452 GO:0005515
Lja3g0447 371 Coils Coil 186 213 - -
Lja3g0447 371 SUPERFAMILY BAR/IMD domain-like 45 258 IPR027267 -
Lja3g0447 371 Gene3D Arfaptin homology (AH) domain/BAR domain 45 267 IPR027267 -
Lja3g0447 371 Coils Coil 220 240 - -
Lja3g0447 371 Gene3D SH3 Domains 292 369 - -
Lja3g0447 371 SUPERFAMILY SH3-domain 265 359 IPR036028 GO:0005515
Lja3g0447 371 PANTHER SH3 DOMAIN-CONTAINING 1 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0447 Lja-Chr3 4551841 4557513 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0447 - - gmx:100777051 661.373