Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0441 ATGAAGTTATTCTCCTCCAATGTTGTTCTGTTTTCTGTGCTGTTGCTGCTTCTGGTAGGATTTGGAAGAAGCAGGCACGACTACCACGACGCACTATCAAAAGCGATCCTCTTCTTCGAGGGGCAGCGATCGGGTTTCCTGCCACAGGATCAGAGAATGACTTGGCGTGGGAACTCCGGCCTCAGCGACGGCTGGACCTACAAAACGGATCTCGCCGGCGGCTACTATGACGCCGGTGACAACGTCAAGTTCGGGTTTCCGATGGCCTTCACCACCACAATGCTGTCTTGGAGCGTGCTCGAGTTCGGAGACGTGATGCCTGCTGATGAACTCAGAAACGCACTCGTCGCTGTTCGTTGGGCCACAGATTATCTTCTCAAGACGGTTTCTCAGCCCAATCGAATTTTTGTTCAGGTGGGTGATCCAAGTTCAGATCATGATTGTTGGGAGAGGCCAGAGGACATGGATACAGCCAGGACTGTGTATGCTGTTGATGCACCAAACGCTGCTTCTGATGTTGCCGGTGAAACTGCTGCCGCACTTGCAGCCTCATCCATGGCATTCCGGTCATTGGATCCGGGTTATGCAGAGACATTACTTCGAAATGCTATCAATGCCTTTCAATTTGCAGATACCTACAGGGGTGCTTACAGTGACAATAACAATGTTAAATATGGTGCCTGCCCATATTATTGTGACTTTGATGGCTATCAGGACGAGTTATTGTGGGGAGCAGCATGGTTAAGGAGGGCCACACAGGATGATAATTTCCTTAACTACATTCAAAGCAATGGCAAAACCCTTGGGGCAGACGACAACATCAATGAGTTTGGTTGGGACAACAAGCATGCTGGTCTTAACGTCCTTGTTTCCAAGGAAGTCCTAGAAGGAAACATGTACTCTCTTGAGTCCTACAAGGCCTCAGCAGAGAGCTTCATTTGCACACTCATACCTGAATCGCCAAGCTCACACATAGATTACACCCCTGGTGGACTTGTATACAGACCCGGAGGCAGCAACTTGCAGCATGCAACTTCAATTGCTTTTCTTGAGTTGGTCTATGCCAATTACCTAACTCACACTTCACAAGCCATCAATTGTGGCAACGTCCATGTTAGTGCACAAACACTTCAACAACATGCTAAGAGACAAGTTGATTACATTTTAGGTGACAATCCAATGGGATTATCGTACATGGTTGGGTATGGAAACTACTATCCTCAACGCATTCATCATCGCGGCTCTTCATTGCCCTCGATCAAGGATCATCCTCAGTTCATTGCGTGCAAAGAAGGTTCAGTGTTCTACAACTCAACAAATCCTAATCCTAATGTGCATGAGGGAGCTGTTGTTGGAGGACCTGGTGAAGATGATTTTTATGTGGATGACCGGGTTGATTTTAGGAAATCTGAGCCAACCACATATATTAATGCACCTTTTGTTGGAGTTTTAGCATATTTTGCTGCTAATCCCAACTTCAGTTGA 1485 0.47 MKLFSSNVVLFSVLLLLLVGFGRSRHDYHDALSKAILFFEGQRSGFLPQDQRMTWRGNSGLSDGWTYKTDLAGGYYDAGDNVKFGFPMAFTTTMLSWSVLEFGDVMPADELRNALVAVRWATDYLLKTVSQPNRIFVQVGDPSSDHDCWERPEDMDTARTVYAVDAPNAASDVAGETAAALAASSMAFRSLDPGYAETLLRNAINAFQFADTYRGAYSDNNNVKYGACPYYCDFDGYQDELLWGAAWLRRATQDDNFLNYIQSNGKTLGADDNINEFGWDNKHAGLNVLVSKEVLEGNMYSLESYKASAESFICTLIPESPSSHIDYTPGGLVYRPGGSNLQHATSIAFLELVYANYLTHTSQAINCGNVHVSAQTLQQHAKRQVDYILGDNPMGLSYMVGYGNYYPQRIHHRGSSLPSIKDHPQFIACKEGSVFYNSTNPNPNVHEGAVVGGPGEDDFYVDDRVDFRKSEPTTYINAPFVGVLAYFAANPNFS* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0441 494 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 387 413 IPR018221 -
Lja3g0441 494 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 460 478 IPR033126 -
Lja3g0441 494 Pfam Glycosyl hydrolase family 9 28 484 IPR001701 GO:0004553|GO:0005975
Lja3g0441 494 PANTHER ENDOGLUCANASE 24 8 493 - -
Lja3g0441 494 SUPERFAMILY Six-hairpin glycosidases 17 489 IPR008928 GO:0005975
Lja3g0441 494 Gene3D - 24 490 IPR012341 GO:0005975
Lja3g0441 494 PANTHER ENDO-1,4-BETA-GLUCANASE 8 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0441 Lja-Chr3 4521534 4526022 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0441 9 490 Glycoside Hydrolase AT1G70710 59.259 0.0 593
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0441 K01179 - gmx:100101849 900.582