Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0423 ATGACAAACAGCTCATCTTCGAAAAAACATGATCAGGATCAGCCTGAGTCAAGTAGTCCTACCCTGAAATCTCAGCGAACCAAAATGCCCAAATCCGAAGACACCGATAAGAAGAACTCGGGTAAGAAACTCAAAGATGTAGAGATAAGTGTTCCAATTGTGTATGGGAACATAGCATTCTGGCTTGGCAAGAAGGCTAGTGAGTATCAATCACATAAGTGGACTGTGTATGTTCGAGGAGCGACCAATGAGGACCTTGGGGCGATAGTAAAACGTTGCGTTTTTCAGCTGCATTCTAGTTTTAATAACCCCACACGGGTTGTGGAGTCACCGCCTTTTGAGTTGTCTGAGACAGGATGGGGGGAGTTTGAGATTGCCATAACATTGTATTTCCACAGTGATGTTTGCGACAAGCCTTTGAACTTATATCATCACTTGAAATTGTATCCTGAGGATGAAAACAGTTCCATGACCACTAAGAAGCCTGTTGTTGTGGAACTTTATGATGAGATAGTCTTCCCTGATCCTTCTGAGGCTTTCTTATCCCGTGTGCAAGGTCATCCAGCTGTGAACTTGCCAAGATTACCTGCTGGGGTCACCTTGCCTCCTCCCATACCTGTTGAGGATGCAAGTAAAAGAAGGAAAGGTGATACCAAAGATCATTCCTTAACCCAATGGTTCACGAATTTCTCAGAAGCAGATGAGCTCTTGCAGCTTGCTGCAGCTCGCCAGCAGGTTCAAGCTCACATTGCTAAACTCAGACGACAGATAAGCTTGATAGATGGACAGCAACAGCAGTTTAAATCTACTCCTGAGCAGTAG 822 0.4465 MTNSSSSKKHDQDQPESSSPTLKSQRTKMPKSEDTDKKNSGKKLKDVEISVPIVYGNIAFWLGKKASEYQSHKWTVYVRGATNEDLGAIVKRCVFQLHSSFNNPTRVVESPPFELSETGWGEFEIAITLYFHSDVCDKPLNLYHHLKLYPEDENSSMTTKKPVVVELYDEIVFPDPSEAFLSRVQGHPAVNLPRLPAGVTLPPPIPVEDASKRRKGDTKDHSLTQWFTNFSEADELLQLAAARQQVQAHIAKLRRQISLIDGQQQQFKSTPEQ* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0423 273 Coils Coil 236 256 - -
Lja3g0423 273 MobiDBLite consensus disorder prediction 1 42 - -
Lja3g0423 273 Pfam YEATS family 71 150 IPR005033 GO:0006355
Lja3g0423 273 MobiDBLite consensus disorder prediction 195 218 - -
Lja3g0423 273 CDD YEATS_TFIID14_like 49 180 - -
Lja3g0423 273 MobiDBLite consensus disorder prediction 27 42 - -
Lja3g0423 273 PANTHER YEATS DOMAIN 16 271 IPR005033 GO:0006355
Lja3g0423 273 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 14B 16 271 - -
Lja3g0423 273 ProSiteProfiles YEATS domain profile. 43 187 IPR005033 GO:0006355
Lja3g0423 273 Gene3D YEATS domain 44 196 IPR038704 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0423 Lja-Chr3 4335263 4337919 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0423 K11341 - gmx:100790602 496.508