Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0414 ATGGTGTTGTCTTATAGGACTTTCTCAAGTATCAACCTTCTTAGAAGAGCATCTTTTTCTAAAATTCAAGCATCTTCCAAGGGATTTGAGGTCCAAAAAGGTCATCTTGCAGTCTATGTTGGAGATGAAATGAGGCGGTTTGTCATTCCAGTATCATACTTAAACCAACCTTCATTTCAAGAGTTACTACAACAAGCCGAAGAAGAATTTGGATATGATCATCCAACTGGTGGTCTCACAATTCCCTGCAGGGAGGATGAGTTCCTAAACCTCATTTCTCAGTTGAATGAATGA 294 0.3912 MVLSYRTFSSINLLRRASFSKIQASSKGFEVQKGHLAVYVGDEMRRFVIPVSYLNQPSFQELLQQAEEEFGYDHPTGGLTIPCREDEFLNLISQLNE* 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0414 97 Pfam Auxin responsive protein 17 93 IPR003676 GO:0009733
Lja3g0414 97 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 11 96 IPR003676 GO:0009733
Lja3g0414 97 PANTHER AUXIN-INDUCED PROTEIN 10A5 11 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0414 Lja-Chr3 4278626 4279657 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0414 23 92 Calmodulin-binding Proteins AT5G20810 52.857 2.52e-19 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0414 K14488 - gmx:100786095 139.043