Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0411 ATGGAAGTTAACATCTCTCTCAACCACCACCACCACCGTCACCCTCTCCGATTAACCACCACCACCTCTTCTCTCTCAATATGCACTCCCCGCACCCTCTTTCTCGGCTGCGCCCACAGTCTCCGCCCACCGTCACACACCGGAGGTCTCTCCCTTCGCTCCAGAACCAAACACAACAAGCTAGCTCTTCTCTCCCCTCGCTTCGTCTTCAAAGCCTCCTTCCACTCTCACTCCCTCATCGTCATCGTCGTCGTTGTCACCGTCTCTGCCGTTTCCCTCCTCCGCCACTTCAGAAACAAGACTCTCAACCAGACACGGGGACAAGCCAAATTCGCGCTATCGCCGCAGGGGAGTAATGTTGGGAACCAGGTCATTGATGAAGTCCAGATTCTTGGTTTTCCGGAATTTCAGAGGGATAGCCCGCGGAGTGAAATTGGCAAGTTGAAGGATCACAATGGGGAGGAGAACAGTGTTTTTGAGAACCAAGATGTCCACCTTCCGTTTTTGAAGTCTTCAATGGTGCAGGAAGCGACTTTGGTGAATGAGGCATCAGAGTCATCTTCGTCTGCTCTTGTGCCGCCTAGTTTCGATAATAATGGTTCCGAGGTGTTGGATGACTCGTTTATGTCTGTGGCTTTCCAATCAAGTTCATTACAGCCTCTAGCTTTTGCTGAGGAAATGGCACTACAAGTAGAAGAAAGTCAAGATAAGGTTGACTCGGATCCTGAGTTGCCTTTAAATATGGTCGAATCTGAGCATACTGCTTCTTCTGATCATGTAAACAATGCACTCACGACAATCGATGAACACGTTGAAGAAAAAATTGAACTTGGTGCCATCAGCACTGATGTCCTTTTTGGTGATTCAGTTAGGGAAGGGCTGTACATGTTTTATGAGGATAACAACTCCGTGACCGGCTCTATGACACCACTTAGTAGTTTAAAGTCATTATCTCCTCATACTTCTTTTATGACTAGAAAAGGATTGCAATCAGCAACAGGAAACACCACCCTAAATGGTTCAGGATTATCTAAAGATGTTTCTCTACATAGTTCAGAGCATGTTGAAGGAGGAGTTAAATTTTCCGGTCATAAAGAAGGCTACCCTCTACATCATGTAAGTCAAAACGTGAGGAAAGGCAGCAGATCCCTGAGAGTCAGGGAAAAGAAATATATGGATCATAATAGTAACAGAGTTTTGCCCCAGAATGGCCACACAATCAGGGTGCATGTTGATCAGGAAACTGATAAAACCACGTTCCATGACAGTCAGAAAATTGATCATTCAGAGCTTCTAAGCAGATATAATAATTTGCTTAAAGTTGGGAGGTTAAATGAATGTGTAGAATTGCTTAAAGATATGGAAACAAAGGGTTTATTAGATATGACTAAGGTTTATCATGCCAAGTTTTTCAACATATGCAAGAAACAAAAAGTTGTTAAAGAAGCTTTTGATTACATTAGGCTTATTCCAAATCCAACACTGAGTACATTTAATATGCTTATGTCAGTTTGCGCAAGTTCCCAAGATTCAGAAGGGGCTTTCCAAGTTATGAGGCTTCTGAAGGATGCTAGACTAGAACCTGACTGCAAACTTTATACCACTCTGATATCAACGTGTGCCAAGAGTGGGAAAGTTGATCTAATGTTTGAAGTGTTTCACAAGATGGTTAATACTGGAGTGGAGGCTAATGTTCTTACCTATGGGGCACTTATTGATGGTTGTGCAAGAGCTGGGCAAGTAGCTAAAGCATTTGGTGCTTATGGGATAATGAGGTCAAAGAATGTGAAGCCAGATCGCGTTGTATTCAATGCACTTATAGCTGCATGTGCACAATCAGGAGCTGTGGATCGTGCTTTTGATGTGTTAGAAGAAATGGAAACTGAAATACAGCCCATTGAACCTGATCACATTACTTTTGGTGCATTGATGAAGGCATGCACAAATGCTGGTCAGGTTGAACGAGCACAAGAAGTGTATAACATGATGCAAAAATATAACATAAAGGGGTCTCCAGAAGTTTATACTATTGCCATTAACTCTTGCAGCCAAACTGGAGATTGGGAATTCGCATGTAGCATATACAATGACATGACCCAGAAAGGGGTGCTCCCTGATGAGATGCTTCTGAGTGCACTAATAGATGTTGCTGGACATGCTAAAAAGCTGGATGCTGCCTTCGATATACTACAAGAAGCCCGTAAAGGAGGAAAATGTATTGGAATAATGGCATATAGCTCATTGATGGGCGCCTGTAGCAAGGCAGGAAATTGGCAGAAAGCTCAGGAGCTATACGAGTATCTTAGATCTCTTAAATTGGTGCAGTCAGTTTCAACAGTAAATGCTTTGATCACTGCACTTTGTGATGGGAATCAATTTCATAAGGCTTTGAAGGTTTTGTCAGAAATGAAAGGACTAGGATTGTGCCCAAACAGTATCACGTTCTCAATACTTATAGTCGCAAGTGAGAAGGAGGACGATATAGAAGCAGCTCAAACGCTTCTTTCTCAAGCCAAAAAGGAGGGCACAGCCCCTAATCTCATTATGTCTCGATGCATAGTTGGAATGTGCCTGCGGAGATTTCAGAGGGCTTGCTTTATTGGTGAACCTGTTTTATCTTTTGACTCAGGACAGCCACAAGTTAATAATAAATGGACTTCACTGGCTTTAACGGTGTATCGTGAAACAATTGGAGCTGGTGAAAAGCCTACAAGTGAAATATTGTCACAAATCTTGGGATGCCTGCAACTCCCTTGTGATACATCTGTGAGAAGTAGACTTGTTGAGAACCTGGGAGTCAGACTCAGCGACGAAGATTCCGGAAGCTCAAACCTCTGTTCATTGGTGAATGGATTTGGTGAATATGATCCTCGTTCATTTTCAATACTTGAGGAAGCTGCTTCACATGGAGTTGTTCCATCTGTATCATTTAAAGTGAATCCTATTGTTATCGATGCCAAAGAGTTGCATGCATTTACGGCTGAGGTATACCTCTTAACTGTTTTGAAAGGTCTCAAGTATCGGCTAGCAGCAGGTGCAAGATTACCCAACATAATCGTTTTATTACCTGTAGAAAAAATGCAAGCTTCATCTCCCAAGGGGGAAAAGATTATTAACGTTGCAGGAAGACTTGGCCAAGAAGTTGCAGCTTTATTTAGGAGGCTTCATATTCCTTACATGGGTCACGAATCGTATGGGAAACTTAGAATTAATGGTCTAGCTCTGACAAAATGGTTTCAGCCGAAACTTGAATCATCTGCATTCAGGGGAAAACCAGATAACTGGAACTCATCCCCATCGCGACTGGGTAGGAGGATTAGCCGTCAGCAGCGAGACATTCGAACTGGCAATCTATCTTTGGACTGA 3366 0.4305 MEVNISLNHHHHRHPLRLTTTTSSLSICTPRTLFLGCAHSLRPPSHTGGLSLRSRTKHNKLALLSPRFVFKASFHSHSLIVIVVVVTVSAVSLLRHFRNKTLNQTRGQAKFALSPQGSNVGNQVIDEVQILGFPEFQRDSPRSEIGKLKDHNGEENSVFENQDVHLPFLKSSMVQEATLVNEASESSSSALVPPSFDNNGSEVLDDSFMSVAFQSSSLQPLAFAEEMALQVEESQDKVDSDPELPLNMVESEHTASSDHVNNALTTIDEHVEEKIELGAISTDVLFGDSVREGLYMFYEDNNSVTGSMTPLSSLKSLSPHTSFMTRKGLQSATGNTTLNGSGLSKDVSLHSSEHVEGGVKFSGHKEGYPLHHVSQNVRKGSRSLRVREKKYMDHNSNRVLPQNGHTIRVHVDQETDKTTFHDSQKIDHSELLSRYNNLLKVGRLNECVELLKDMETKGLLDMTKVYHAKFFNICKKQKVVKEAFDYIRLIPNPTLSTFNMLMSVCASSQDSEGAFQVMRLLKDARLEPDCKLYTTLISTCAKSGKVDLMFEVFHKMVNTGVEANVLTYGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIAACAQSGAVDRAFDVLEEMETEIQPIEPDHITFGALMKACTNAGQVERAQEVYNMMQKYNIKGSPEVYTIAINSCSQTGDWEFACSIYNDMTQKGVLPDEMLLSALIDVAGHAKKLDAAFDILQEARKGGKCIGIMAYSSLMGACSKAGNWQKAQELYEYLRSLKLVQSVSTVNALITALCDGNQFHKALKVLSEMKGLGLCPNSITFSILIVASEKEDDIEAAQTLLSQAKKEGTAPNLIMSRCIVGMCLRRFQRACFIGEPVLSFDSGQPQVNNKWTSLALTVYRETIGAGEKPTSEILSQILGCLQLPCDTSVRSRLVENLGVRLSDEDSGSSNLCSLVNGFGEYDPRSFSILEEAASHGVVPSVSFKVNPIVIDAKELHAFTAEVYLLTVLKGLKYRLAAGARLPNIIVLLPVEKMQASSPKGEKIINVAGRLGQEVAALFRRLHIPYMGHESYGKLRINGLALTKWFQPKLESSAFRGKPDNWNSSPSRLGRRISRQQRDIRTGNLSLD* 1122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0411 1121 Gene3D Tetratricopeptide repeat domain 580 739 IPR011990 GO:0005515
Lja3g0411 1121 Gene3D Tetratricopeptide repeat domain 740 916 IPR011990 GO:0005515
Lja3g0411 1121 Coils Coil 821 841 - -
Lja3g0411 1121 Gene3D Tetratricopeptide repeat domain 459 579 IPR011990 GO:0005515
Lja3g0411 1121 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 564 598 IPR002885 -
Lja3g0411 1121 Pfam PPR repeat 438 459 IPR002885 -
Lja3g0411 1121 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 599 629 IPR002885 -
Lja3g0411 1121 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 671 705 IPR002885 -
Lja3g0411 1121 Pfam Pentatricopeptide repeat domain 798 857 IPR002885 -
Lja3g0411 1121 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 636 670 IPR002885 -
Lja3g0411 1121 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 494 528 IPR002885 -
Lja3g0411 1121 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 776 810 IPR002885 -
Lja3g0411 1121 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 529 563 IPR002885 -
Lja3g0411 1121 TIGRFAM PPR: pentatricopeptide repeat domain 601 627 IPR002885 -
Lja3g0411 1121 TIGRFAM PPR: pentatricopeptide repeat domain 779 811 IPR002885 -
Lja3g0411 1121 TIGRFAM PPR: pentatricopeptide repeat domain 638 669 IPR002885 -
Lja3g0411 1121 TIGRFAM PPR: pentatricopeptide repeat domain 497 530 IPR002885 -
Lja3g0411 1121 TIGRFAM PPR: pentatricopeptide repeat domain 567 599 IPR002885 -
Lja3g0411 1121 TIGRFAM PPR: pentatricopeptide repeat domain 674 707 IPR002885 -
Lja3g0411 1121 TIGRFAM PPR: pentatricopeptide repeat domain 532 564 IPR002885 -
Lja3g0411 1121 Pfam Pentacotripeptide-repeat region of PRORP 497 635 IPR033443 -
Lja3g0411 1121 Pfam Pentacotripeptide-repeat region of PRORP 644 785 IPR033443 -
Lja3g0411 1121 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 741 775 IPR002885 -
Lja3g0411 1121 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MRL1, CHLOROPLASTIC 72 1121 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0411 506 857 Glycosyltransferase AT1G05670 20.144 5.52e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0411 - - gmx:100814164 1600.1