Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0408 ATGGTCATGCCTATGCCCATTCAATCTCAGTTATACCCCAACAATGCCAATGGATTTTCCACTGGTGGGGCCATTGATTTCAATTTCAATTCACTCCAGAAACATCATCACCATCAACAACAACAGGGGCCTATTGATCCTAGTGTTCTTGTTCACAATTCAAATTCCTTGCCTTCTCTTCAGAAGGACTGGCAGGAGATAGATCAGTTTATCAGATATCAGCATGAACAGACGAGATTGATGGTACAAGCGAAAGGAAGCCAATATGTGGAAGCAATGCTGAAAGATATGGAATCCCAATCACTTCTGATGCTGAAGAAGAAGGATGAAGAAATTGCACAGGCTGCAAATAAAAGGTTAGAGCTTGAACATTTCATAAGAAAATTGGAAGCAGAGAATTGGATTTGGAGGAAGGAGGCTCAGGACAAAGAAGCCATGGCTTTGGCACTCTACACAGCCTTGGAAGAGCAGAAGGAAATAATAGCTTGTTCTCAATCTCATGGTTTTGTGGCAAATGAGGCTGATGCTGAGTCTCATTGGGGTGAAACAAATGGTGGGAATGATGAAGAAGAAGGAACAGGGGAGAAGAACAGAGTGGAACAAAAACAGAGTACAAGAAAAGATGAAGTGATGGTTTGTAAAAGCTGTCATTCTAGGAAGTCGTGCTTTCTATTCCTTCCATGCAGGCACCTTGCTTCGTGCAAATCCTGTGATGCTATTCTCAAGGCTTGCCCTGTTTGTGGAATGCAAAAGAAGTCTAGCATTGAGACTTTGAATTTCTAG 783 0.4215 MVMPMPIQSQLYPNNANGFSTGGAIDFNFNSLQKHHHHQQQQGPIDPSVLVHNSNSLPSLQKDWQEIDQFIRYQHEQTRLMVQAKGSQYVEAMLKDMESQSLLMLKKKDEEIAQAANKRLELEHFIRKLEAENWIWRKEAQDKEAMALALYTALEEQKEIIACSQSHGFVANEADAESHWGETNGGNDEEEGTGEKNRVEQKQSTRKDEVMVCKSCHSRKSCFLFLPCRHLASCKSCDAILKACPVCGMQKKSSIETLNF* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0408 260 PIRSF SBP1_RNase_bind 8 260 IPR017066 -
Lja3g0408 260 Coils Coil 112 132 - -
Lja3g0408 260 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 5 258 IPR017066 -
Lja3g0408 260 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 2-RELATED 5 258 - -
Lja3g0408 260 MobiDBLite consensus disorder prediction 182 203 - -
Lja3g0408 260 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 258 IPR013083 -
Lja3g0408 260 MobiDBLite consensus disorder prediction 177 203 - -
Lja3g0408 260 Pfam Zinc finger, C3HC4 type (RING finger) 212 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0408 Lja-Chr3 4199161 4200458 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0408 212 247 Miscellaneous Gene Families AT2G21380 41.667 5.24e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0408 K19042 - gmx:100789863 218.779