Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0407 ATGGGTGCCCTGGATCACATCTCTGAACTCTTTGACTGTTCTTCCTTTGGAAATTCCAAATACAAGAAGCGCAAGCAATTCCAGACGGTGGAGGTGAAAGTGAAGATGGACTGCGAAGGATGCGAGAGGAAAGTGAAGAAATCGGTGGAGGGGATGAAGGGTGTCACCCAAGTGGAGGTGGAACGAAAAGCAAGCAAGGTTACAGTTACAGGCTATGTGGAACCTTCTAAGGTGGTGGCGCGTATTGCTCACCGCACAGGTAAGAGGGCGGAGCTGTGGCCATATGTGCCGTACGATGTGGTGGCGCATCCCTATGCTCCCGGTGTTTATGACAAGAAAGCGCCATCTGGTTATGTTAGGAATTCGGAGTATGATCCCAACGTGTCCCACCTCGCTCGTGCTAGCTCCACCGAAGTTAGATATACAACCGCTTTCAGCGACGAAAACCCCACCGCTTGTGCTGTTATGTAA 471 0.5096 MGALDHISELFDCSSFGNSKYKKRKQFQTVEVKVKMDCEGCERKVKKSVEGMKGVTQVEVERKASKVTVTGYVEPSKVVARIAHRTGKRAELWPYVPYDVVAHPYAPGVYDKKAPSGYVRNSEYDPNVSHLARASSTEVRYTTAFSDENPTACAVM* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0407 156 CDD HMA 31 91 IPR006121 GO:0046872
Lja3g0407 156 ProSiteProfiles Heavy-metal-associated domain profile. 36 92 IPR006121 GO:0046872
Lja3g0407 156 SUPERFAMILY HMA, heavy metal-associated domain 27 94 IPR036163 GO:0046872
Lja3g0407 156 Pfam Heavy-metal-associated domain 32 87 IPR006121 GO:0046872
Lja3g0407 156 PANTHER COPPER TRANSPORT PROTEIN ATOX1-RELATED 2 156 IPR045181 GO:0046872
Lja3g0407 156 PANTHER HEAVY METAL TRANSPORT/DETOXIFICATION SUPERFAMILY PROTEIN 2 156 - -
Lja3g0407 156 Gene3D - 16 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0407 Lja-Chr3 4172420 4173332 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0407 - - gmx:100780624 277.715