Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0406 ATGGCGGAAGAGCACGAGAATGCACAGACAGAGGCAGAGGTTGAAGAAGAGTTCTCCGTTTGGAAGAAGAACACTCCTCTGTTGTACGATTTCTTCATCTCTCACCCTCTTGTATGGCCTTCTCTCACCGTTCAATGGCTCCCATCCACTCCTCAACCCCACTCCAACTCTTCCTTCAACCTCCACTCAATCCTCTTAGCCACCCACACCGCCGACGACGAACCCAACTTCCTAATGCTCGGCCAAGTCACCCTCCCTGTAAACACATTGCAGCCCATCGTCGCCGCTGATCCTCAAAACCCCATTTTACCTAAGGTGGAGATTACCCGGAGGATTCCTGTTGATGGGGAGGTGAATCGAGCGCGATCCATGCCGCAGAACGCTGATATTGTAGCTGCCAAGACTTGTAGCTCCGAGGTTTATGTGTTTGATTTTGCGAAGCAACGAGGGGATGGGAATGAGCCTGATTTGAGGTTGAGGGGGCATGATAAGGAAGGCTTTGGCTTGTCCTGGAGCCCTTTTAAGAGTGGGTATCTTTTGAGTGGTTCAAATGACCACAAGGTTTGCTTGTGGGATGTGCCGGCTGATTCGAAAGGGAGCGTGCTTGATGCGGTTCATGTTTATGAGGGCCATGAAAATGTGGTGGAAGATGTATCCTGGCATTTGAAGAATGAAAATTTATTTGGGTCTGTTGGGGATGACTGCAAGTTGGTAATTTGGGACCTGCGGACAAACAAAGCCCAACAATCTGTCAAATCACATGAGAAGGAGGTGAACTTCCTTTCTTTCAGTCCATATAATGAATGGATTTTGGCTACAGCATCCTCAGACACCACCATTGGTCTCTTTGATACACGGAAGCTGATGGAACCGGTTCATGTTTTAAGTAGCCACACAGATGAGGTATTCCAGGTAGAGTGGGATCCTAATCACGAGACTGTATTGGCTTCTTCTGGTGCTGACAGACGGCTGATGGTTTGGGACATTAACAGGGTTGGGGATGAGCAGATAGAGGGAGATGGTGAGGGCGGTCCTCCTGAACTACTCTTCTCTCATGGTGGTCACAAAGGGAAAATATCAGATTTTTCATGGAACCAAAACCAGCCATGGGTCATCTCAAGTGTAGATGAGGAAAATTCTCTCCATGTCTGGCAAATGGCTGATAGCATTTACAATGATGGTGACGACGAAGATATGTGGTATGCTGCTAATGACCAACACTAA 1224 0.4804 MAEEHENAQTEAEVEEEFSVWKKNTPLLYDFFISHPLVWPSLTVQWLPSTPQPHSNSSFNLHSILLATHTADDEPNFLMLGQVTLPVNTLQPIVAADPQNPILPKVEITRRIPVDGEVNRARSMPQNADIVAAKTCSSEVYVFDFAKQRGDGNEPDLRLRGHDKEGFGLSWSPFKSGYLLSGSNDHKVCLWDVPADSKGSVLDAVHVYEGHENVVEDVSWHLKNENLFGSVGDDCKLVIWDLRTNKAQQSVKSHEKEVNFLSFSPYNEWILATASSDTTIGLFDTRKLMEPVHVLSSHTDEVFQVEWDPNHETVLASSGADRRLMVWDINRVGDEQIEGDGEGGPPELLFSHGGHKGKISDFSWNQNQPWVISSVDEENSLHVWQMADSIYNDGDDEDMWYAANDQH* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0406 407 PANTHER WD40 REPEAT FAMILY 1 399 - -
Lja3g0406 407 ProSiteProfiles Trp-Asp (WD) repeats profile. 159 193 IPR001680 GO:0005515
Lja3g0406 407 ProSitePatterns Trp-Asp (WD) repeats signature. 179 193 IPR019775 -
Lja3g0406 407 SMART WD40_4 288 328 IPR001680 GO:0005515
Lja3g0406 407 SMART WD40_4 152 192 IPR001680 GO:0005515
Lja3g0406 407 SMART WD40_4 201 241 IPR001680 GO:0005515
Lja3g0406 407 SMART WD40_4 345 385 IPR001680 GO:0005515
Lja3g0406 407 SMART WD40_4 244 284 IPR001680 GO:0005515
Lja3g0406 407 ProSiteProfiles Trp-Asp (WD) repeats profile. 295 330 IPR001680 GO:0005515
Lja3g0406 407 ProSiteProfiles Trp-Asp (WD) repeats profile. 208 250 IPR001680 GO:0005515
Lja3g0406 407 SUPERFAMILY WD40 repeat-like 108 386 IPR036322 GO:0005515
Lja3g0406 407 ProSitePatterns Trp-Asp (WD) repeats signature. 315 329 IPR019775 -
Lja3g0406 407 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 159 193 - -
Lja3g0406 407 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 16 86 IPR022052 -
Lja3g0406 407 Pfam WD domain, G-beta repeat 290 328 IPR001680 GO:0005515
Lja3g0406 407 Pfam WD domain, G-beta repeat 349 384 IPR001680 GO:0005515
Lja3g0406 407 Pfam WD domain, G-beta repeat 205 241 IPR001680 GO:0005515
Lja3g0406 407 Pfam WD domain, G-beta repeat 248 284 IPR001680 GO:0005515
Lja3g0406 407 Pfam WD domain, G-beta repeat 159 192 IPR001680 GO:0005515
Lja3g0406 407 PANTHER WD-40 REPEAT-CONTAINING PROTEIN MSI2-RELATED 1 399 - -
Lja3g0406 407 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 295 330 - -
Lja3g0406 407 PRINTS G protein beta WD-40 repeat signature 179 193 IPR020472 -
Lja3g0406 407 PRINTS G protein beta WD-40 repeat signature 315 329 IPR020472 -
Lja3g0406 407 PRINTS G protein beta WD-40 repeat signature 271 285 IPR020472 -
Lja3g0406 407 Gene3D - 1 402 IPR015943 GO:0005515
Lja3g0406 407 ProSiteProfiles Trp-Asp (WD) repeats profile. 251 286 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0406 Lja-Chr3 4168063 4170549 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0406 208 387 Miscellaneous Gene Families AT5G08390 21.667 1.89e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0406 K10752 - gmx:100791834 681.019