Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0401 ATGGCATCCAAGAGAATACTGAAGGAGCTCAAGGACTTGCAGAGAGATCCACCAACTTCATGCAGTGCAGGCCCTGTGGGAGAGGACATGTTCCATTGGCAAGCAACCATCATTGGTCCAAATGACTGCCCCTATTCTGGTGGAGTTTTCCTTGTGACCATTCATTTCCCTCCTGATTATCCCTTCAAACCTCCCAAGGTTGCATTCAGGACCAAGGTATTCCATCCCAACATCAATAGCAATGGCAATATTTGCTTGGACATACTCAAAGAACAATGGAGCCCTGCTCTCACCATATCCAAGGTGCTTCTCTCTATATGTTCTCTGCTAACAGATCCAAATCCTGATGACCCTTTGGTGCCTGAAATTGCTCATATGTGCAAGACAGACAAAGTGAAGTATGAGTCCACTGCTAGAAGCTGGACCCAGAAGTATGCAATGGGATAA 447 0.4609 MASKRILKELKDLQRDPPTSCSAGPVGEDMFHWQATIIGPNDCPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKVKYESTARSWTQKYAMG* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0401 148 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 74 89 IPR023313 -
Lja3g0401 148 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 145 - -
Lja3g0401 148 Gene3D Ubiquitin Conjugating Enzyme 1 148 IPR016135 -
Lja3g0401 148 Pfam Ubiquitin-conjugating enzyme 5 141 IPR000608 -
Lja3g0401 148 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 147 IPR000608 -
Lja3g0401 148 SUPERFAMILY UBC-like 2 147 IPR016135 -
Lja3g0401 148 CDD UBCc 3 142 IPR000608 -
Lja3g0401 148 PANTHER BNAA01G32320D PROTEIN 3 145 - -
Lja3g0401 148 SMART ubc_7 4 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0401 Lja-Chr3 4126924 4129216 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0401 2 114 Miscellaneous Gene Families AT3G17000 36.975 1.73e-20 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0401 K06689 - gmx:100787053 311.612