Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0398 ATGGAAACTCGTAGCCGGAAGCGGGCGGAGGCTTCCTCAGCTGCCCCTTCATCTTCTTCTTCTGCTCCCAACACCCGTTCCACCAAACGCGCTCGCATAACCTCTTCTTCTACTACCTCCTCTTCTTGCGCCGCAACCACCCCTGCTCCTCCTGTTCGCTCCGTCAACACTCGTTCCCGCTCCGCCTCTAAAACCAAGGAAAAAGAACCCTTACCGCCTAAGAATCCTCCGACTCCGACTCCTACTCCTACTCATACTCATCCCATGGACAATACCAACGAATCCTCCGGCTCGCGCCGCGATCGTCGCGGCAAGAATACTGATAACTCTGATAAGGGGAAGGAGAAGGAGTATGATGTGAGGGCTAGGGAGAGGGAAGCAGCGAGGGCGATGGAGCTTAACGTGGAGAGCGGCGCTGGTGTTGGCGATGAGGATGATAACGACAGTGACGGTGGTGTGGGGATCTTGCACCAGAATTTGACGTCAGCGAGTAGTGCGCTTCAAGGGCTTCTGAGGAAACTGGGAGCTGGGTTGGATGATCTGCTTCCGTCGTCGGCGATGGGGGTTTCTGGGTCGTCGTCTCATCAGAGTGGGAGGCTGAAGAAGATCCTGTTTGGGCTGCGGGCTGATGGGGAAGAAGGTCGGCAGGTGGAGGCTCTGACTCAGCTTTGTGAGTTGCTATCTATTGGGACTGAGGAATCGCTTAGCACTTTCTCTGTTGATTCGTTTGTTCCGGTGCTCGTGGGGCTGCTGAATCATGAGAGTAATCCTGATGTTATGCTTCTTGCGGCCAGGGCGCTGACCCATCTCTGTGATGTGCTACCTTCATCCTGTGCTGCTGTTGTTCATTATGGTGCGGTTTCAATCTTCTGCGCGAGGTTGCTCACCATTGAGTATATGGACTTGGCTGAACAGTCCCTTCAAGCTCTAAAGAAGATATCTCAGGAGCACCCAACTGCATGCCTACGAGCTGGTGCTCTCATGGCTGTACTTTCTTATTTAGATTTCTTCTCAACAGGAGTTCAGCGGGTTGCATTGTCGACTGCGGCAAATATGTGCAAGAAGCTTCCTTCTGATGCAGCTGACTTTGTGATGGAAGCTGTTCCTCTCCTGACAAACCTTCTTCAGTACCATGATGCCAAGGTCTTGGAGCATGCCTCTGTTTGTTTGACTAGAATAGCTGAAGCATTTGCATCTTCTCCAGACAAATTAGATGAACTGTGCAATCATGGACTGGTAGCACAAGCTTCCTCCCTCATTTCTAACAGCAGTTCTGGAGGTGGACAAGCTTCTCTCAGCACGCCAACATATACAGGTTTAATCCGGCTTCTTTCAACTTGTGCAAGTGGGTCCCCTCTTGGAGCTAAAACTTTACTTCATCTCGGAATTAGCAGTATTCTTAAAGATATTCTATCGGGTTCTGGGGCTTCTTCTAATTCCTCTGTTTCTCCTGCATTAAGTAGACCACCGGATCAGATATTTGAGATTGTAAACCTGGCAAATGAGCTTCTACCCCCATTGCCACAAGGAACGATCTCCCTCCCTGTCAGCTCCAACTTATTTATAAAGGGTCCTGTTGTAAAAAAGTCTCCTGCTGGCTCTTCTGGGAAACAAGAAGATACAAATGGAAACGTTCCTGAGATATCAGCTCGAGAAAAATTATTAAATGATCAGCCTGAGCTACTTAAGCAGTTTGAGATGGATCTCCTCCCAGTTTTAATACAGATTTATGGTTCTAGTGTCAATGGTCCTGTTCGGCACAAATGTCTTTCTGTCATTGGAAAATTGATGTATTTCAGCACAGCAGAGATGATCCAGTCTTTATCGAGTGTGACAAATATATCTAGTTTCTTAGCTGGTGTCTTGGCATGGAAAGACCCACATGTTTTGATTCCTGCCTTGCAAATTGCTGAAATTCTCATGGAAAAGCTCCCTGGGACATTCTCTAAAATGTTCATCAGAGAAGGTGTCGTCCATGCGGTGGACCAACTTATTATAGCTGCGAATTCAACCAATGTCTCAGCACAAGCATCTACTGCTGAGAAGGATAATGATTCTATAGCTGGCGCATCATCTCGCTCTAGGCGATATCGACGACGCAGTGGTAACTCCCACCCTGATGGAAATCCTTTGGTTGATTTGAAAAGTCCAGTTTCTGTAAATGTTGGCTCACCTCCAAGTTCTGCGGATATTCCAACAGTGAATTCTAGTATCCGGTTATCTGTTAGCGCAACTGCTAAAGCTTTTAAAGATAAGTACTTCCCTTCAGAGCCTGGGGCTGTTGAAGTGGGTGTTACAGATGATCTCTTACATCTGAAAAATCTTTGCATGAAGTTAAATACTGGTGTTGATGACCAAAAGACTAATGGTAAGGTGAAATCTAAAACTTCTGGAGTTGGTCTGGAAGAGTATTTAATTGGGGTCATCTCTGACATGCTGAAGGAACTTGGCAAAGGAGATGGGGTATCTACTTTCGAATTTATTGGTAGTGGTGTTGTTGCAGCTTTGCTGAATTATTTTTCTTGTGGGTATTTCTCTAAAGACCGACCCTCGGAAACCCACCTTCCAAAGCTTCGCCAGCAAGCACTTACTAGGTTTAAGTCATTTATAGCCGTTGCACTTCCTGCCACAGTTGACATTGGGGCTGTGGCTCCTATGACTGTCTTGATCGAAAAGCTTCAAAATGCTTTGTCCTCCTTGGAGCGTTTCCCTGTTGTGCTGAGTCATTCATCTAGGTCATCTAGTGGAAGTGCACGCCTCTCATCTGGATTAAATGCATTATCTCAGCCCTTCAAGTTGCGTCTTTGTCGAGCCCAGGGTGAAAAGTCACTTAGGGATTATTCATCCAATGTTGTACTGATTGATCCATTAGCAAGTTTAGCAGCCATTGAGGAATTTCTTTGGCCTCGTATTCAGCGAAGTGAATCTGGTCAAAAGTCAATTGCATCTGCTGGAAATTCTGAATCTGGGACAACTCCTGCAGGAGCTGGTGTTTCATCTCCCACTGCATCCACTCCTTCGACTACCCGCCGTCATTCTACAAGAACCAGATCATCTGTTAATATTGGCGATGCGCCCAGAAAAGAGACAACTCAAGATAAAAGCTTGAGCTCATCCAAAGGTAAGGGAAAGGCTGTATTAAAGCCTGCACAAGAGGAGGCAAGAGGACCTCAAACCAGGAATGCTGCACGTAGAAGAGCAGCTCTTGATAAAGATGTTCAAATGAAGCCTGCAAATGGTGACTCTACTTCTGAGGATGAAAGTTTGGAAATATCTCCTGTTGAGATTGATGAGGCATTGGTAATTGAAGATGATGATATTTCTGATGACGAAGATGATGACCATGATGATTTGCTTAGGGATGATTCTCTTCCTCTTTGCTCACCTGACAAAGTACATGATGTGAAATTGGGAGACTCGGCTGAGGATAGTAGTGGTGCTCCTGCAACAAGTGATGGCCAAACTAATGCAGCCTCAGGTTCTGGCAGCAAAGTTGGTGCAGTCAGGGGATCAGACTCGGCTGATTTTAGGAGTGGCTTTTCTTCGAGCTCAAGGGGTGCTATGTCGTTTGCTGCTGCGGCCATGGCAGGACTTGGATCTGCTAATGGCAGAGGGATCAGGGGTGCCAGAGATCGGCATGGTCGTCCACTGTTTGGTAGTTCTAATGATCCTCCAAAGTTGATCTTTACTGTCGGTGGGAAGCAACTTAATAGGCAGTTGACTATATATCAGGCAATTCAAAGACAGCTTGTGCTAGATGAAGATGAGGACGAGAGGTTTGCTGGAAGTGACTTTGTATCTAGTGATGGAAGCAGGTTGTGGGGTGATATTTACACTATAAATTATCAGAGGGTGGATAACCCACCAGATAAGGCTTCATCTGGAGCTTCAAACACTTCAAAATCTGGCAAAACCGTATCAAATTGCAGTTCTGAAGCGAAGCTGCATCAGACATCTGTATTAGACAGTATCTTGCAGGCTGAACTGCCCTGTGATATGGAGAAATCTAATCCTACATATAATATACTGGCGCTGTTGCGTGTGCTAGAGGGTTTGAACCAGCTTGCACCCCGTTTGAGGACCCAAGTGGTTACTGATAACTTTGCTGTGGGAAAACTTTTGGAATTAGATGACCTAGTTGTTACCGCCGGTGCTAGGGTACCTTCAGAGGAGTTTATAAGCAGCAAGCTTACTCCAAAATTAGCTAGGCAAATACAAGATGCCCTTGCCCTATGCAGTGGGAGTCTTCCATCATGGTGTTACCAGTTAACTAAAGCTTGCCCATTTCTTTTTCCTTTTGAGACCCGGCGACAGTACTTCTATTCAACTGCTTTTGGGCTATCCCGTGCACTGCATCGGCTCCAGCAGCAGCAGGGTGCTGATGGCCATGGATCAATGAGTGAAAGAGAGGTTAGGGTTGGGAGGTTGCAGCGCCAAAAGGTTCGTGTCTCTCGAAACCGCATTTTGGATTCTGCTGCTAAAGTGATGGAAATGTATTCTAGTCAGAAGGCTGTACTTGAAGTAGAATATTTTGGTGAAGTTGGCACTGGCCTGGGTCCCACCCTCGAGTTCTATACACTTCTAAGTCATGACTTGCAACAAGTTGTACTTCAAATGTGGAGATCGGGCACTTCAGGGAAATATCAAATGGAAATTGATGAAGATGAAAAGAAACTGAAGAGCAGTGAAAGCTCTAATGCTGTTGATGGAGAACTTGTTCAAGCTCCTCTTGGATTGTTTCCACGGCCGTGGCCTGTGAATGCTGATGCATCAGAGGGTAGCCATTTTTTTAAAGTGATTGAACATTTCCGGCTTATGGGCCGTGTAGTAGCTAAAGCACTTCAAGATGGACGTCTATTGGATTTACCTTTGTCTATGGCATTTTATAAACTTGTACTTGGTCAAGAGCTTGATTTGTACGACATTCTTTTCCTTGATGCTGAACTCGGGAAAACTTTGCAAGAGCTGAATGCCCTTGTTTGCAGAAAACATCATATAGAATCTATTGGTGGTGGCTATACCGTTACAGATGCTAATTTGCATTTCCGTGGAGCCCCAATTGAAGATCTCTGCTTGGATTTTACCCTTCCTGGTTATCCAGACTACATCTTGAAATCTGGAGATGAAATTGTTGACATCAGTAATCTAGAGGAATACATATCCCTGGTGGTTGATGCCACTGTCAAGACGGGAATAATGCGTCAAATTGAAGCATTTAGGGCTGGGTTTAATCAGGTTTTTGACATCTCTTCTTTACAAATTTTTACTCCCGAAGAACTGGACTACTTGCTTTGTGGCCGTAGGGAAATGTGGAAGACCGAGACACTTGCTGATCATATAAAATTTGACCATGGGTATACTGCAAAGAGCCCTGCGATAGTTAATTTACTTGAAATTATGGGGGAGTTCACACCAGATCAGCAGCGTGCCTTCTGTCAATTTGTTACTGGAGCACCGAGGCTGCCGCCTGGTGGATTGGCTGTTCTAAATCCAAAACTAACGATTGTGAGGAAGCTTTCATCAACTGCAGCTAATGCTTCATCAAACGGCAACGGACCTTCAGAAACAGCAGATGACGACTTGCCAAGTGTGATGACATGTGCTAATTACCTGAAGCTTCCTCCTTATTCTACCAAGGAAATAATGTACAAGAAGCTACTATATGCAATCAATGAAGGCCAGGGATCCTTTGATTTATCATGA 5703 0.457 METRSRKRAEASSAAPSSSSSAPNTRSTKRARITSSSTTSSSCAATTPAPPVRSVNTRSRSASKTKEKEPLPPKNPPTPTPTPTHTHPMDNTNESSGSRRDRRGKNTDNSDKGKEKEYDVRAREREAARAMELNVESGAGVGDEDDNDSDGGVGILHQNLTSASSALQGLLRKLGAGLDDLLPSSAMGVSGSSSHQSGRLKKILFGLRADGEEGRQVEALTQLCELLSIGTEESLSTFSVDSFVPVLVGLLNHESNPDVMLLAARALTHLCDVLPSSCAAVVHYGAVSIFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVAQASSLISNSSSGGGQASLSTPTYTGLIRLLSTCASGSPLGAKTLLHLGISSILKDILSGSGASSNSSVSPALSRPPDQIFEIVNLANELLPPLPQGTISLPVSSNLFIKGPVVKKSPAGSSGKQEDTNGNVPEISAREKLLNDQPELLKQFEMDLLPVLIQIYGSSVNGPVRHKCLSVIGKLMYFSTAEMIQSLSSVTNISSFLAGVLAWKDPHVLIPALQIAEILMEKLPGTFSKMFIREGVVHAVDQLIIAANSTNVSAQASTAEKDNDSIAGASSRSRRYRRRSGNSHPDGNPLVDLKSPVSVNVGSPPSSADIPTVNSSIRLSVSATAKAFKDKYFPSEPGAVEVGVTDDLLHLKNLCMKLNTGVDDQKTNGKVKSKTSGVGLEEYLIGVISDMLKELGKGDGVSTFEFIGSGVVAALLNYFSCGYFSKDRPSETHLPKLRQQALTRFKSFIAVALPATVDIGAVAPMTVLIEKLQNALSSLERFPVVLSHSSRSSSGSARLSSGLNALSQPFKLRLCRAQGEKSLRDYSSNVVLIDPLASLAAIEEFLWPRIQRSESGQKSIASAGNSESGTTPAGAGVSSPTASTPSTTRRHSTRTRSSVNIGDAPRKETTQDKSLSSSKGKGKAVLKPAQEEARGPQTRNAARRRAALDKDVQMKPANGDSTSEDESLEISPVEIDEALVIEDDDISDDEDDDHDDLLRDDSLPLCSPDKVHDVKLGDSAEDSSGAPATSDGQTNAASGSGSKVGAVRGSDSADFRSGFSSSSRGAMSFAAAAMAGLGSANGRGIRGARDRHGRPLFGSSNDPPKLIFTVGGKQLNRQLTIYQAIQRQLVLDEDEDERFAGSDFVSSDGSRLWGDIYTINYQRVDNPPDKASSGASNTSKSGKTVSNCSSEAKLHQTSVLDSILQAELPCDMEKSNPTYNILALLRVLEGLNQLAPRLRTQVVTDNFAVGKLLELDDLVVTAGARVPSEEFISSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALHRLQQQQGADGHGSMSEREVRVGRLQRQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSHDLQQVVLQMWRSGTSGKYQMEIDEDEKKLKSSESSNAVDGELVQAPLGLFPRPWPVNADASEGSHFFKVIEHFRLMGRVVAKALQDGRLLDLPLSMAFYKLVLGQELDLYDILFLDAELGKTLQELNALVCRKHHIESIGGGYTVTDANLHFRGAPIEDLCLDFTLPGYPDYILKSGDEIVDISNLEEYISLVVDATVKTGIMRQIEAFRAGFNQVFDISSLQIFTPEELDYLLCGRREMWKTETLADHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKLSSTAANASSNGNGPSETADDDLPSVMTCANYLKLPPYSTKEIMYKKLLYAINEGQGSFDLS* 1901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0398 1900 Gene3D - 188 507 IPR011989 -
Lja3g0398 1900 MobiDBLite consensus disorder prediction 1088 1118 - -
Lja3g0398 1900 MobiDBLite consensus disorder prediction 10 59 - -
Lja3g0398 1900 SMART hect_3 1490 1900 IPR000569 GO:0004842
Lja3g0398 1900 Gene3D Hect, E3 ligase catalytic domains 1418 1662 - -
Lja3g0398 1900 MobiDBLite consensus disorder prediction 1 120 - -
Lja3g0398 1900 MobiDBLite consensus disorder prediction 978 1178 - -
Lja3g0398 1900 MobiDBLite consensus disorder prediction 94 120 - -
Lja3g0398 1900 Pfam HECT-domain (ubiquitin-transferase) 1527 1900 IPR000569 GO:0004842
Lja3g0398 1900 MobiDBLite consensus disorder prediction 677 727 - -
Lja3g0398 1900 MobiDBLite consensus disorder prediction 1058 1072 - -
Lja3g0398 1900 CDD HECTc 1479 1895 IPR000569 GO:0004842
Lja3g0398 1900 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 93 1900 IPR045322 GO:0006511|GO:0061630
Lja3g0398 1900 SMART arm_5 357 395 IPR000225 GO:0005515
Lja3g0398 1900 SMART arm_5 231 272 IPR000225 GO:0005515
Lja3g0398 1900 SMART arm_5 314 354 IPR000225 GO:0005515
Lja3g0398 1900 MobiDBLite consensus disorder prediction 677 691 - -
Lja3g0398 1900 MobiDBLite consensus disorder prediction 1144 1162 - -
Lja3g0398 1900 MobiDBLite consensus disorder prediction 978 1026 - -
Lja3g0398 1900 SUPERFAMILY ARM repeat 200 666 IPR016024 -
Lja3g0398 1900 ProSiteProfiles HECT domain profile. 1600 1900 IPR000569 GO:0004842
Lja3g0398 1900 MobiDBLite consensus disorder prediction 1286 1310 - -
Lja3g0398 1900 PANTHER HECT E3 UBIQUITIN LIGASE-RELATED 93 1900 - -
Lja3g0398 1900 SUPERFAMILY Hect, E3 ligase catalytic domain 1471 1893 IPR035983 GO:0004842
Lja3g0398 1900 MobiDBLite consensus disorder prediction 1119 1140 - -
Lja3g0398 1900 MobiDBLite consensus disorder prediction 132 155 - -
Lja3g0398 1900 Gene3D Hect, E3 ligase catalytic domain 1771 1898 - -
Lja3g0398 1900 MobiDBLite consensus disorder prediction 1285 1310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0398 Lja-Chr3 4083581 4092901 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0398 K10590 - gmx:100783336 2970.64