Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0397 ATGGGTTTCTTCAGCACCATTTTAGGGTTTTTCGGATTCGGAGTTGGAATCTCCATTGGTCTTATCGCTGGCTATTTTCTCTTCATCTACTTCCAACCCACCGATGTTGAGGATCCGAAAATCAAGCCACTGGCGGAGCAAGACGCGGAGACGCTGCTACGAATGCTCCCTGAGATTCCGCTTTGGATTAAGAATCCAGATTTTGATCGACTTGACTGGCTGAACAAGTTTGTGGAATATATGTGGCCTTATCTTGACAAGGCAATTTGTAAGACTGCCAAGAACATTGCAAAACCCATAATTGCTGAGCAGATTCCTAAATATAAAATTGATTCTGTTGAGTTTGAGACGCTCACTTTGGGGTCCCTGCCGCCAACTTTTCAAGGAATGAAAATTTATATGACTGATGAGAAGGAGCTAATTATGGAGCCTTCTGTAAAATGGGCGGGAAATCCTAATATCACTGTTGCTGTTAAGGCATTTGGGTTGAAAGCAACCGTTCAGATCATGGATTTGCAAGTTTTCCTTTTGCCCCGCATTACTTTGAAGCCTTTGGTTCCTAGCTTTCCTTGCTTTGCCAACATCAATGTCTCTCTCATGGAAAAGCCACATGTTGACTTTGGACTAAAGCTTGTAGGGGCTGATCTTATGTCTATTCCTGGCGCCTACAGGATTGTTCAGGACCTCATCAAAGATCAGGTTGCAAACATGTATCTATGGCCCAAAACCCTGGAAGTTCAAGTATTGGATCCAGTAAAAGCTATGAGGAGGCCTGTTGGAATTTTACATGTAAAGGTTGTGCAAGCGATGAAGTTAAAGAAGAAAGATCTTCTTGGTGCATCTGACCCTTATGTGAAGCTGAAGCTTACTGAGGATAAGTTGCCATCGAAAAAGACTACTGTAAAGCACAAGAACTTAAATCCAGAATGGAATGAAGAATTTAATATGGTAGTCAAAGATCCAGAGTCCCAGGTTTTACAGATTAATGTTTATGACTGGGAGCAGGTTGGGAAGCATGACAAGATGGGTATGAATGTGATCCCTTTAAAAGAAGTTTCCCCTGAAGAGCCTAAACGTGTTACTCTTGACCTCCGAAAAACTTTGGATCCCAATGATGTTCAAAATGAGAAGTCACGAGGGCAGATTGTTGTGGAATTGACTTATAAACCTTTCAAGGAGGAGGAGCTGGGCAGGGGATTTGATGAGACACAGACAGTGCCGAAAGCACCAGAAGGTACTCCAGCTGGTGGAGGTCAGCTTGTAATAATAGTCCATGAAGCACAAGATGTTGAAGGGAAGTACCACACTAATCCACATGTCCGTCTTATTTACAGAGGAGATGAGAAAAAGTCTAAGCGCATAAAAAAGAACAGGGATCCAAGATGGGAAGAGGAGTTCAAATTTATGGCGGAGGAGCCTCCCACCAATGACAGATTACATGTGGAGGTTGTCAGCACTTCATCACGAAACCTGCTCCATCAGAAGGAATCATTGGGTTATGTCGACATCAATCTTGGGGATGTTGTTTCTAACAAAAGGATCAATGAGAAGTACCATCTTATAGACTCCAAGAATGGTCGCATTCAGATAGAGTTGCAGTGGAGAACTTCTTCATAG 1617 0.428 MGFFSTILGFFGFGVGISIGLIAGYFLFIYFQPTDVEDPKIKPLAEQDAETLLRMLPEIPLWIKNPDFDRLDWLNKFVEYMWPYLDKAICKTAKNIAKPIIAEQIPKYKIDSVEFETLTLGSLPPTFQGMKIYMTDEKELIMEPSVKWAGNPNITVAVKAFGLKATVQIMDLQVFLLPRITLKPLVPSFPCFANINVSLMEKPHVDFGLKLVGADLMSIPGAYRIVQDLIKDQVANMYLWPKTLEVQVLDPVKAMRRPVGILHVKVVQAMKLKKKDLLGASDPYVKLKLTEDKLPSKKTTVKHKNLNPEWNEEFNMVVKDPESQVLQINVYDWEQVGKHDKMGMNVIPLKEVSPEEPKRVTLDLRKTLDPNDVQNEKSRGQIVVELTYKPFKEEELGRGFDETQTVPKAPEGTPAGGGQLVIIVHEAQDVEGKYHTNPHVRLIYRGDEKKSKRIKKNRDPRWEEEFKFMAEEPPTNDRLHVEVVSTSSRNLLHQKESLGYVDINLGDVVSNKRINEKYHLIDSKNGRIQIELQWRTSS* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0397 538 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 247 IPR039010 -
Lja3g0397 538 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 536 IPR045050 GO:0008289
Lja3g0397 538 SMART C2_3c 261 361 IPR000008 -
Lja3g0397 538 SMART C2_3c 419 517 IPR000008 -
Lja3g0397 538 CDD C2 262 364 - -
Lja3g0397 538 Gene3D C2 domain 419 537 IPR035892 -
Lja3g0397 538 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 249 IPR031468 GO:0008289
Lja3g0397 538 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN-RELATED 1 536 - -
Lja3g0397 538 Gene3D C2 domain 256 408 IPR035892 -
Lja3g0397 538 Pfam C2 domain 260 361 IPR000008 -
Lja3g0397 538 Pfam C2 domain 418 520 IPR000008 -
Lja3g0397 538 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 257 393 IPR035892 -
Lja3g0397 538 PRINTS C2 domain signature 304 317 IPR000008 -
Lja3g0397 538 PRINTS C2 domain signature 277 289 IPR000008 -
Lja3g0397 538 PRINTS C2 domain signature 326 334 IPR000008 -
Lja3g0397 538 ProSiteProfiles C2 domain profile. 399 518 IPR000008 -
Lja3g0397 538 ProSiteProfiles C2 domain profile. 240 362 IPR000008 -
Lja3g0397 538 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 417 535 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0397 Lja-Chr3 4073551 4079575 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0397 258 516 Lipid Metabolism Gene Families AT3G61300 28.996 1.39e-14 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0397 - - gmx:100781189 1009.98