Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0390 ATGCGTGTCAACCTTATTCTCTTCTTCTCACCATCATCATCAAAGCAGAAAAAGAAGACTCACCTTTTCTCTCTTCTTCACCAGATAACAATGGCGATGGCTTTCAAAATGGCGACGACAGGGATGTGGGTGACGGATGAGTGCAAGAACTCGTTCATGGAGATGAAGTGGAAGAAGGTCCACAGGTACATAGTCTTCAAGATCGACGAGAGGTCCCGTCTTGTTACTGTCGACAAGGTGGGTGGTCCCGGCGAGAGCTACGCCGATCTCGCCGCCTCCTTGCCCGGCGATGACTGCAGATACGCCGTCTTCGACTTCGATTTCGTCACCGTCGATAACTGCCGCAAGAGCAAGATCTTCTTCATCGCATGGTCTCCAACAGCATCAAGGATAAGAGCTAAGATTCTATACGCAACATCCAAAGATGGGTTGAGAAGAGCTCTTGATGGAATCAGCTATGAACTTCAGGCCACTGATCCAACTGAGATGGGATTTGATGTAATTCAAGACAGAGCCAAGTAG 522 0.4866 MRVNLILFFSPSSSKQKKKTHLFSLLHQITMAMAFKMATTGMWVTDECKNSFMEMKWKKVHRYIVFKIDERSRLVTVDKVGGPGESYADLAASLPGDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKDGLRRALDGISYELQATDPTEMGFDVIQDRAK* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0390 173 PANTHER COFILIN-RELATED 26 173 IPR017904 GO:0015629|GO:0030042
Lja3g0390 173 Gene3D Severin 29 173 IPR029006 -
Lja3g0390 173 SUPERFAMILY Actin depolymerizing proteins 36 171 - -
Lja3g0390 173 CDD ADF_cofilin_like 40 172 IPR017904 GO:0015629|GO:0030042
Lja3g0390 173 ProSiteProfiles ADF-H domain profile. 41 173 IPR002108 GO:0003779
Lja3g0390 173 Pfam Cofilin/tropomyosin-type actin-binding protein 48 170 IPR002108 GO:0003779
Lja3g0390 173 SMART adf_2 46 173 IPR002108 GO:0003779
Lja3g0390 173 PANTHER ACTIN DEPOLYMERIZING FACTOR 5-RELATED 26 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0390 Lja-Chr3 3998716 4000330 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0390 K05765 - pvy:116129213 287.345