Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0384 ATGGATCCCTTAGCCTCCTCTTATTTCATTCTCATTACTCTCCTACTCCTCACTCCCACAGGTGTCAGAGCTACCACCTTCACCTTCCTCAACAGATGTGACTACACAGTGTGGCCCGGCATTCTCGCAAATGCCGGCAGCTCCCCTCTTGAAAGCACCGGCTTCGAGCTCCCCACCGCCACTTCCCGCACCTTCCAAGCCCCCACCGGCTGGTCCGGCCGCTTCTGGGCCCGAACTGGCTGCACATTCGACGCATCAGGCACCGGGTCATGCCTCACCGGCGACTGCGGCTCCGGCCAGGTCGAATGCAACGGCGCCGGAGCAGCCCCACCTGCCACCCTCGCCGAGTTCACACTCGGCACCCTCGGGCAGGACTTCTACGACGTGAGCCTCGTCGACGGGTACAATCTCCCCATGATCGTGGAAGGCACCGGCGGGTCGGGTATCTGCGCGTCCACCGGGTGCAGTTCGGATCTGAACCGGCAGTGTCCCGCGGAGCTGAAGGCGTCTGATGGCAGCGCGTGTAAGAGCGCGTGTGAGGCTTTTGGCAGCCCGGAGTATTGTTGCAGCGGCGCGTATGGGTCACCGGTGACTTGTAGGCCGTCGATTTACTCGGAGATGTTCAAGTCTGCTTGCCCGAAATCGTATAGCTACGCATACGATGATGCTTCTAGTACTTTTACATGTACTGCTGCAGATTATACGGTTACCTTTTGCCCATCCTCACCTAGTCAGAAATCTTCACGAGATGCTAACCCAGTGACCTCAACCACGCCACAACAAGGGTCAGGGACAGGGATAGGAACCGGGATTGGGACAGGAACAGGGACCAATGGGGGTGTGGTATACACTGGTCCAGACACCGGTTTAGGGAACTCAGTTCCCGGAACAGGGTCTGGGTTAGGTTCAGGATCAGGATCCGGAGGAGAGACCATGCTGGCAGATGGGTCATATCTAGCTGGTTTAGCCATGGGAGATTCCCCAAGAACAGCTTTAATATCTGCTTTTGTCTACCTTGCCAGCTTTTTGCTTATTCTCTTGTTGCTTTAG 1050 0.5695 MDPLASSYFILITLLLLTPTGVRATTFTFLNRCDYTVWPGILANAGSSPLESTGFELPTATSRTFQAPTGWSGRFWARTGCTFDASGTGSCLTGDCGSGQVECNGAGAAPPATLAEFTLGTLGQDFYDVSLVDGYNLPMIVEGTGGSGICASTGCSSDLNRQCPAELKASDGSACKSACEAFGSPEYCCSGAYGSPVTCRPSIYSEMFKSACPKSYSYAYDDASSTFTCTAADYTVTFCPSSPSQKSSRDANPVTSTTPQQGSGTGIGTGIGTGTGTNGGVVYTGPDTGLGNSVPGTGSGLGSGSGSGGETMLADGSYLAGLAMGDSPRTALISAFVYLASFLLILLLL* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0384 349 PANTHER OS03G0233200 PROTEIN 9 265 IPR001938 -
Lja3g0384 349 ProSiteProfiles Thaumatin family profile. 24 240 IPR001938 -
Lja3g0384 349 MobiDBLite consensus disorder prediction 240 282 - -
Lja3g0384 349 ProSitePatterns Thaumatin family signature. 87 103 IPR017949 -
Lja3g0384 349 CDD TLP-PA 26 239 - -
Lja3g0384 349 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 9 265 - -
Lja3g0384 349 MobiDBLite consensus disorder prediction 290 306 - -
Lja3g0384 349 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Lja3g0384 349 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Lja3g0384 349 PRINTS Pathogenesis-related protein signature 230 239 IPR001938 -
Lja3g0384 349 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Lja3g0384 349 PRINTS Pathogenesis-related protein signature 87 116 IPR001938 -
Lja3g0384 349 Pfam Thaumatin family 31 240 IPR001938 -
Lja3g0384 349 Gene3D Thaumatin 25 240 IPR037176 -
Lja3g0384 349 MobiDBLite consensus disorder prediction 240 308 - -
Lja3g0384 349 SMART tha2 27 240 IPR001938 -
Lja3g0384 349 SUPERFAMILY Osmotin, thaumatin-like protein 25 241 IPR037176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0384 Lja-Chr3 3917226 3919775 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0384 9 252 Receptor kinase-like Gene Family AT5G38280 46.875 4.93e-77 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0384 - - gmx:100801173 518.85