Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0369 ATGCCAATGCCACCTTCCTCATTCCGAACCCCAAACTTCAACCGCACCCTCAAACACACAACCGATCTCTGCATCGTCAAGCCCATCCTCTCTCCCCGTACCCACCTCTCCGACGCTGTTTCTTCTCTCGACGTTTTGCACCCCAACGGCATTCGCTTACCCACTCGCGTTCTCGCCAATCTCCTCCGCCGCTGCTCCGACGCCAAGTCCCACCGTGACGGGAAGCTGGTCCACCTCCACTTGAAGCTCACTGGTTACAAACACCCCACCACGCTTTTAGCTAACCATTTGATTCATATGTATTTTAGTTGCGGCGATCATGTTCGTGCACGCGAGGTGTTCGATAAAATGGGTGTTAGAAATTTGTATTCCTGGAACAATGTGCTTTCTGGGTATGCTAAGTTGGGGATGATGGAGCAAGCTAGGAGCTTGTTTTGTCGAATGCCGGACAAGGATTGCGTGTCGTGGAATACGATGGTGGTCGGGTTTGCGCACAGTGGGAGATTCGAGGAGGCTTTGAGGTTTTATGGACAGTTGAGGAGATTGTCTATTGGGTACAATGTGTATTCCTTTGCTGGTGTTTTGATTGTTTGTGTGAAATTGAAAGAGGTTGAACTTTGTAGGCAGATCCATGGGCAGGTTTTGGTTATTGGATTGCTGTCCCATGTGGTTGTTTCCAGCTCGATTGTTGATGCTTATGTAAAGTGTGGAAGGATGGAAGATGCAAGGAGATTGTTTGATGAAATGCCCCTGAGGGATATTCCTGCGTGGACGATCTTGGTTTCAGGATATGCCATGTGGGGGGACATGGAATCAGCTGCAGAAATGTTTAGTCAGATGCCTTGGAGAAATTCCTACTCGTGGACATCTTTGATTGGCGGCTATGCTAGGAATGGTCTGGGCCATGAAGCACTTGGAGTGTTTAGAAAGATGATCAAGCACCAAGTTAGACCTGATCAATTTACATTCAGTAGTTGCTTCTTTGCTTGTGCGACTATTGCTTCCCTAAAGCATGGTAAGGAATTACATGCGTTTTTGGTGAGAAATAACATCAGAACTAATACTATGGTTGTTAGTGCTATTGTTGATATGTATTCGAAATGTGGAAGCTTGGAAACAGCCTGGCGAGTATTTAATTTAGTTGGAAATAAGCAAGATGTAGTGTTGTGGAATACGATGATATCAGCGTTGGCTCACCATGGCTTTGGTACAGAAGCAATGGTGATGCTAAATGATATGATAAGATCAGGAGTGGAGCCCAATAGGGCCACTTTTGTTGTCCTACTAAATGCTTGTAGTCTTTCAGGTCTTGTTCAGGAAGGACTTCAGTTTTTCAAGTTCATGACTAGTGAGTTTGGTGTTGTCCCAGATCAAGAACACTATGCTTGCCTAACTGATCTTTTGGTCCGAGCTGGATATTTTGATGAATCGGTGAAGGGCTTGCAGATTATGGATTGTACACTTGGTTGGAATTCTTTGCTTGGTGTATGTAGAACACGCGGAAATATAGATCCTGGAAGAGAAGTAGTTGAATTCCTTATTAAATTGCAGCCTCAGTCGTCCGCTGCATATTTATTATTTTCCAGTATATACGCCGCTCTTCTGAAATGGGGATTGGTTGACAATGCAAGACCCATTGATGAAATACGTGTGAGGAAAGATCAGGCCATGAGTTGGATTGAGATTGAGAATAAGGTTCATGCTTTCACTGTATCAGATGGATCACACCCTCTAAAGGAAACAATATACTCATCTTTAGGGTATTTGAGTAGCCAGATGCAGGGCAAAGCCCCTTTACTAACTTTGGAATGTGAAACTTAG 1821 0.4465 MPMPPSSFRTPNFNRTLKHTTDLCIVKPILSPRTHLSDAVSSLDVLHPNGIRLPTRVLANLLRRCSDAKSHRDGKLVHLHLKLTGYKHPTTLLANHLIHMYFSCGDHVRAREVFDKMGVRNLYSWNNVLSGYAKLGMMEQARSLFCRMPDKDCVSWNTMVVGFAHSGRFEEALRFYGQLRRLSIGYNVYSFAGVLIVCVKLKEVELCRQIHGQVLVIGLLSHVVVSSSIVDAYVKCGRMEDARRLFDEMPLRDIPAWTILVSGYAMWGDMESAAEMFSQMPWRNSYSWTSLIGGYARNGLGHEALGVFRKMIKHQVRPDQFTFSSCFFACATIASLKHGKELHAFLVRNNIRTNTMVVSAIVDMYSKCGSLETAWRVFNLVGNKQDVVLWNTMISALAHHGFGTEAMVMLNDMIRSGVEPNRATFVVLLNACSLSGLVQEGLQFFKFMTSEFGVVPDQEHYACLTDLLVRAGYFDESVKGLQIMDCTLGWNSLLGVCRTRGNIDPGREVVEFLIKLQPQSSAAYLLFSSIYAALLKWGLVDNARPIDEIRVRKDQAMSWIEIENKVHAFTVSDGSHPLKETIYSSLGYLSSQMQGKAPLLTLECET* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0369 606 Pfam PPR repeat 154 182 IPR002885 -
Lja3g0369 606 Pfam PPR repeat 227 252 IPR002885 -
Lja3g0369 606 Pfam PPR repeat 95 120 IPR002885 -
Lja3g0369 606 Pfam PPR repeat 256 283 IPR002885 -
Lja3g0369 606 Pfam PPR repeat 123 153 IPR002885 -
Lja3g0369 606 Gene3D Tetratricopeptide repeat domain 30 184 IPR011990 GO:0005515
Lja3g0369 606 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 222 256 IPR002885 -
Lja3g0369 606 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 121 155 IPR002885 -
Lja3g0369 606 PANTHER - 58 280 - -
Lja3g0369 606 TIGRFAM PPR: pentatricopeptide repeat domain 123 154 IPR002885 -
Lja3g0369 606 TIGRFAM PPR: pentatricopeptide repeat domain 424 457 IPR002885 -
Lja3g0369 606 TIGRFAM PPR: pentatricopeptide repeat domain 388 421 IPR002885 -
Lja3g0369 606 TIGRFAM PPR: pentatricopeptide repeat domain 286 319 IPR002885 -
Lja3g0369 606 TIGRFAM PPR: pentatricopeptide repeat domain 256 280 IPR002885 -
Lja3g0369 606 TIGRFAM PPR: pentatricopeptide repeat domain 228 254 IPR002885 -
Lja3g0369 606 TIGRFAM PPR: pentatricopeptide repeat domain 154 184 IPR002885 -
Lja3g0369 606 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 284 318 IPR002885 -
Lja3g0369 606 PANTHER - 153 594 - -
Lja3g0369 606 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 153 594 - -
Lja3g0369 606 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 58 280 - -
Lja3g0369 606 Gene3D Tetratricopeptide repeat domain 437 544 IPR011990 GO:0005515
Lja3g0369 606 Gene3D Tetratricopeptide repeat domain 337 436 IPR011990 GO:0005515
Lja3g0369 606 Gene3D Tetratricopeptide repeat domain 197 336 IPR011990 GO:0005515
Lja3g0369 606 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 386 420 IPR002885 -
Lja3g0369 606 Pfam PPR repeat family 284 331 IPR002885 -
Lja3g0369 606 Pfam PPR repeat family 386 432 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0369 Lja-Chr3 3758910 3761137 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0369 132 594 Glycoside Hydrolase AT3G49170 31.435 2.01e-76 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0369 - - lja:Lj3g3v3500060.1 1218.76