Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0362 ATGAGTCTTGTCCTTCTAATATGTGTGATCATTTTAGCAGGTTTTGAAGTTGAAGCACTATCCTATGATTACTCTGCCAGCATTGAATGTTTGGCAAATCCACAAAAGCCTCAGTACAATGGAGGAATCATCCAAAACCCAGAACTGAATGATGGACTCAAAGGGTGGACTGCATTTAGGGGTGCAAAAATAGAACATAGAGAATCATCAAACAACAAATATGTGGTAGCCCATAGCAGAAATCAAACACATGATAGTGTTTCTCAGAAGATTTACTTGCAAAAGGATAACCATTATACCTTATCAGCTTGGATACAAGTGAGTGATGGAAAAGTTCCAGTAAGAGCATTTGTCAAAACAACTGAAGGACTCAAATTTGCTGGTGCCACTTTTGCTGAGTCTAATTGTTGGTCTATGCTTAAGGGTGGTCTCACAGCAAATACATCAGGAACTGCTGAGCTTTATTTTGAGAGCGAAAACACTTCAGTGGAAATTTGGATTGATAGCATTTCCTTGCAACCTTTCACACAAAAGCAATGGAGTTCTCATCAACATCAAAGCACTGAGAAGGCTCGCAAGAGCAAGGTATTAGTCCAAGCAATTGATGAACAAGGAAATCCTTTACCAAATGCAAGCATACACATTACACAAAAGAGGTTAGGTTTTCCATTTGGGAGTGCCATTAACCACAACATCCTGAACAATGGGGCATATCAAAATTGGTTCACCTCAAGGTTCACAGTGACCACATTTGAGAATGAAATGAAGTGGTACATGACAGAAACAACACAAGGCAAGCCTAACTACTATTATGCTGATGCCATGTTAAAGTTTGCCAAGCAACACAACATCGCGGTTCGCGGCCACAACATTTTCTGGGATGATCCTCAATTCCAACCTGGTTGGCTTTCTTCACTCTCACCATTCCAACTCAAATCAGCAGTGAGAAACAGGATCAATTCCCTTGTGTATAAATACAGGGGCCAACTCATTGGTTGGGATGTTGTGAATGAAAATATGCACAATTCATTGTTTGAAAGCAAACTTGGACAAACTTTTTCAGCCCAGACTTTCAAAGTGGTTCATTTTATTGATGGCCATACCACTTTGTTTTTAAATGAATATAACACCATTGAGGACCAGAGAGATGGTGCAGCAAACCCTGCAAGGTACCTCCAGAAGATCAAAGAGATCCAAAGTTATCCGGGAAATAAAGGATTGCCTCTTGGAATTGGATTGGAGTCTCATTTCCCTGAATTCCCTCCAAACATGCCTTACATGAGAGCTTCCATTGATACTCTTGCAGCCACTGGTTTACCTATTTGGATCACAGAACTAGATGTAAAAAACCAGAATGGACAGGCAGGAGTTCTTGAGCAGGTTCTAAGAGAAATACACTCTCACCCTGCGATTCGAGGCATTGTAATGTGGACAGCATGGTCGCCACAAGGTTGCTATACAATGTGCTTAACAGATAACAATTTCAAAAACTTGCCAACAGGGAATGTTGTGGACAAGCTTCTTCATGAGTGGGGTTGGTCGAAAACGTTATCAGGGACAACAGACCAGAATGGGAACCTTGAGGTGTCACTTTTTCATGGAGATTATGAAGTGGAAATTAGTCACCCTGCTAAGAAGAATTATACTCTCACTCATCATGTTCAAGTAGTTCCAAATGATGAGTCTGGGAAATCATCTCAATTTGTACAACTTTCTATGTAG 1722 0.4059 MSLVLLICVIILAGFEVEALSYDYSASIECLANPQKPQYNGGIIQNPELNDGLKGWTAFRGAKIEHRESSNNKYVVAHSRNQTHDSVSQKIYLQKDNHYTLSAWIQVSDGKVPVRAFVKTTEGLKFAGATFAESNCWSMLKGGLTANTSGTAELYFESENTSVEIWIDSISLQPFTQKQWSSHQHQSTEKARKSKVLVQAIDEQGNPLPNASIHITQKRLGFPFGSAINHNILNNGAYQNWFTSRFTVTTFENEMKWYMTETTQGKPNYYYADAMLKFAKQHNIAVRGHNIFWDDPQFQPGWLSSLSPFQLKSAVRNRINSLVYKYRGQLIGWDVVNENMHNSLFESKLGQTFSAQTFKVVHFIDGHTTLFLNEYNTIEDQRDGAANPARYLQKIKEIQSYPGNKGLPLGIGLESHFPEFPPNMPYMRASIDTLAATGLPIWITELDVKNQNGQAGVLEQVLREIHSHPAIRGIVMWTAWSPQGCYTMCLTDNNFKNLPTGNVVDKLLHEWGWSKTLSGTTDQNGNLEVSLFHGDYEVEISHPAKKNYTLTHHVQVVPNDESGKSSQFVQLSM* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0362 573 PANTHER ENDO-1,4-BETA-XYLANASE A-LIKE 4 566 - -
Lja3g0362 573 SUPERFAMILY (Trans)glycosidases 206 515 IPR017853 -
Lja3g0362 573 Pfam Carbohydrate binding domain 43 159 IPR003305 GO:0016798
Lja3g0362 573 PANTHER GLYCOSYL HYDROLASE 4 566 IPR044846 GO:0004553|GO:0005975
Lja3g0362 573 Pfam Glycosyl hydrolase family 10 222 478 IPR001000 GO:0004553|GO:0005975
Lja3g0362 573 Gene3D - 31 175 - -
Lja3g0362 573 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 217 507 IPR001000 GO:0004553|GO:0005975
Lja3g0362 573 SMART glyco_10 255 508 IPR001000 GO:0004553|GO:0005975
Lja3g0362 573 Gene3D Glycosidases 210 516 - -
Lja3g0362 573 ProSitePatterns Glycosyl hydrolases family 10 (GH10) active site. 438 448 IPR031158 -
Lja3g0362 573 SUPERFAMILY Galactose-binding domain-like 40 173 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0362 Lja-Chr3 3706734 3709915 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0362 16 551 Glycoside Hydrolase AT4G33840 58.564 0.0 668
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0362 - - gmx:100775272 865.914