Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0355 ATGGTGAAGCCTTGTGACTTGCAAATCAACATTAATGGTCAGCAGATATTCCATTTGAAAGAGAAGATTATTTCAAAATACTGTGGAAAGGTGAAGAAGATCATGAATCATCAAAAGAGAAGGTTTCAAGTGAAGGACTTGAGGATCAAAATCAATGATTTCCCTGGAGGCCCAGATGGGTTTGAGCTAGTTTCAAGGTTTTGTTACAACGATGGGAAAATACCAATCACTGCAGCTAATGTGCCTCTCCTCCATTGCAGTGCTGTTTATCTTGGAATGACTGAGAAGGTTTTCAGCAACAATCTCTTGCAGCAAACAGAAGCTTTTCTTGAAGAAATCTATCACTGGAAATGGAATGATGTACTTGTAAGCCTCATTAGTTGCCAGTGGTTTTACACATATGCAGATGACTATGGTCTCCTGGAGAAGATCATTTCTGCAGTCTTAGCAAAGATTTCCCAAAATTCAGACTCCAACCTTCTCCGCTACTCCTCTTCATCATCATCACTGTCATTAACATCTTCGCCGGAAAGCAATTCTGCCAAGAGGTTCTCTTCTTCATCCCAAACTACCCCAGTTAAAAACAAGTCAGGTTTGCATAGCAAAGCATGGTGGTTTGATGATTTGGCAACTTTACCCCCAAATATAATTGAGAAGCTCTTTCAGACGGCTGGAGCATACAAAGATGATAACAACAATTTAATCCTCACAAGATTTCTGTTGCTTTATCTGAAAACAGCTACTCAAACCAGAGTGGTTAATTGTAGAAACAGAAGTGAGTATGCTGCTCTTGCAGAAACAGCTGCTTATGGTGTAATATCTGTTGGTAGGAAGAAGTTCTCTTGCAGAGGTCTTTTTTGGGTATTGAGGATTTTATCTGGGTTTGGGATGAGTAGTGGTTGCAGAACTGAATTGGAGAAATTGATTGGTGGAATGCTTGAGCAGGCTACACTGGATGATCTTCTGGTGTCAGGGCATGATATGGGAGTTCATTATGATGTTGATTTGGTGATAAGGTTGGCTAGACTATTTGCTGATAGCAATGGCTCTGATGGATTGTATTTACAGAAGATGAAAAGGGTTGGTAGATTACTTGACAAGTATTTGAGAGAGATATCCCCTGACCAGAACCTCAAGATCTCTCAATTTCTTGGAGTTGCAGAGTGCTTGCCAGACCCTGCAAGGGATTACTTTGATGGTGTCTACAAAGCCATTGACATCTATCTTGAGTCTCATCCAACTATGACATTTGAGGAAAGATCGAGATTGTGTGGATGCCTTAATTGCAGTAAACTCAGCTTTGAAGCTAGTAAAGATTTGGCCAAGAACCCCAGAATACCTCCAAGAATAGCAATGGAGGCTCTTATTTCTCAAGGATCAAAAATTCCAACAAGCGACTTTGTAACTGAGAGTCCAAGGATGAAGAAGCCTTCCAAAATATTTTTGTACAATGAAGCCAACAGAGATAGCTTCTCCCGAGAAAATAAAGATAGAGCAAACCTTCAGAGAATGCAATGGAAAGTAGCAGAACTGGAGAGCTTAGACAAAGAAATGAATGGTCAGATTTCAAAGTTGTTTAGCCATAATCTCTTCCGTAGTCCTGCACGTGCTAGAGCCTCGCCAAGATTGTGTTGA 1635 0.4055 MVKPCDLQININGQQIFHLKEKIISKYCGKVKKIMNHQKRRFQVKDLRIKINDFPGGPDGFELVSRFCYNDGKIPITAANVPLLHCSAVYLGMTEKVFSNNLLQQTEAFLEEIYHWKWNDVLVSLISCQWFYTYADDYGLLEKIISAVLAKISQNSDSNLLRYSSSSSSLSLTSSPESNSAKRFSSSSQTTPVKNKSGLHSKAWWFDDLATLPPNIIEKLFQTAGAYKDDNNNLILTRFLLLYLKTATQTRVVNCRNRSEYAALAETAAYGVISVGRKKFSCRGLFWVLRILSGFGMSSGCRTELEKLIGGMLEQATLDDLLVSGHDMGVHYDVDLVIRLARLFADSNGSDGLYLQKMKRVGRLLDKYLREISPDQNLKISQFLGVAECLPDPARDYFDGVYKAIDIYLESHPTMTFEERSRLCGCLNCSKLSFEASKDLAKNPRIPPRIAMEALISQGSKIPTSDFVTESPRMKKPSKIFLYNEANRDSFSRENKDRANLQRMQWKVAELESLDKEMNGQISKLFSHNLFRSPARARASPRLC* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0355 544 MobiDBLite consensus disorder prediction 168 196 - -
Lja3g0355 544 ProSiteProfiles NPH3 domain profile. 203 461 IPR027356 -
Lja3g0355 544 PANTHER PHOTOTROPIC-RESPONSIVE NPH3 FAMILY PROTEIN 3 518 - -
Lja3g0355 544 Pfam NPH3 family 204 437 IPR027356 -
Lja3g0355 544 SUPERFAMILY POZ domain 4 95 IPR011333 -
Lja3g0355 544 PANTHER OS12G0117600 PROTEIN 3 518 IPR043454 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0355 Lja-Chr3 3630106 3632264 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0355 17 522 EF-hand Containing Proteins AT3G44820 25.979 7.85e-47 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0355 - - gmx:100808259 783.097