Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0350 ATGGCTGGGAAATTCGCCACTGCTAATGGGTCTATCTATGTCTGCAATTTGCCTTTTGGGACTGATGAAGATATGTTGGCTGAATATTTTGGCACTATTGGAGTAATCAAGAAAGATAAACGTACAGGGAGACCGAAAATATGGTTATATCGAGACAAAGAGACTCATGAACCAAAGGGGGATGCTACTGTGACGTACGAGGATCCACATGCTGCTTCGGCTGCTGTTGAATGGTTTAACAACAAAGATTTTCATGGTAATACAATTGGAGTTTTTATAGCAGAGTCCAAAAACAAAGATGATCAAGTAGCAGATCCAGTTGTAGCTGTAGCTGTGCCTGTAGCTGTTGATGTTGTTGGTGAACTAGAGGAAACTGACAGGGATATTAATGGTGGTAGTGGAAGAGGTAGAGGTCAACATGATGCCTCAGGCAAACCCTGGCAACAAGAGGGCGATTGGATGTGTCCGAATACAAGTTGCTCCAATGTGAATTTTGCCTTTCGCGGTGCGTGTAATCGCTGTGGAAGTGCTCGACCTGCTGGTGCTGCTGGTGCTGGAGGGGGTGGGGGCCGTGGCAAGGGACGTGCTGGACAAGAGGCAGGTGGTATTGGCCGTCCAGCTGGTGGAGGGCTCTTTGGTCCCAATGACTGGCCTTGTCCAATGTGTGGCAATATCAACTGGGCAAAACGGATGAAATGCAATATCTGCAATACAAATAAGCCTGGGCATAATGAGGGTGGTGTAAGAGGAGGGCGAGCTGGAGGTTACAAAGAGCTTGATGAAGAGGAAATTGAAGAAACTAAACGTCGTAGGCGGGAGGCTGAAGATGATGGGGAGCTGTATGATGAATTTGGAAATCTTAAGAAGAAATTCCGTGCTAAAACACAGCAAGCTGAAGCTGCACGTGTGCTTCCTGGTTCAGGGCGTGCTGGTTGGGAGGTTGAGGAACTAGGGATTGTCAGGGATGCTAGAGAAAGAAGTAGAGACAGAGGAAGGGAACATAATGATGGAGAGAACAGGAACAACAGCAGAGAGCGAGATGAAAAGGAGAGGCATAGCAGTCGGAACAGAGAGAGGGACAGGGGAAGAGATCGAGACTGGGATCATGTTGATCGTGATAGAGACTATGGGCGAGACCGGGATCGGGATCGGGATCGACATAGACACCGTTATTAA 1176 0.4787 MAGKFATANGSIYVCNLPFGTDEDMLAEYFGTIGVIKKDKRTGRPKIWLYRDKETHEPKGDATVTYEDPHAASAAVEWFNNKDFHGNTIGVFIAESKNKDDQVADPVVAVAVPVAVDVVGELEETDRDINGGSGRGRGQHDASGKPWQQEGDWMCPNTSCSNVNFAFRGACNRCGSARPAGAAGAGGGGGRGKGRAGQEAGGIGRPAGGGLFGPNDWPCPMCGNINWAKRMKCNICNTNKPGHNEGGVRGGRAGGYKELDEEEIEETKRRRREAEDDGELYDEFGNLKKKFRAKTQQAEAARVLPGSGRAGWEVEELGIVRDARERSRDRGREHNDGENRNNSRERDEKERHSSRNRERDRGRDRDWDHVDRDRDYGRDRDRDRDRHRHRY* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0350 391 Gene3D - 212 243 - -
Lja3g0350 391 Gene3D - 147 182 - -
Lja3g0350 391 SUPERFAMILY Ran binding protein zinc finger-like 143 181 IPR036443 -
Lja3g0350 391 ProSitePatterns Zinc finger RanBP2-type signature. 153 174 IPR001876 -
Lja3g0350 391 ProSitePatterns Zinc finger RanBP2-type signature. 217 236 IPR001876 -
Lja3g0350 391 Pfam Zn-finger in Ran binding protein and others 216 242 IPR001876 -
Lja3g0350 391 Pfam Zn-finger in Ran binding protein and others 150 179 IPR001876 -
Lja3g0350 391 MobiDBLite consensus disorder prediction 320 384 - -
Lja3g0350 391 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 15 3 388 - -
Lja3g0350 391 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 96 IPR000504 GO:0003723
Lja3g0350 391 SUPERFAMILY RNA-binding domain, RBD 10 99 IPR035979 GO:0003676
Lja3g0350 391 MobiDBLite consensus disorder prediction 254 277 - -
Lja3g0350 391 Gene3D - 9 92 IPR012677 -
Lja3g0350 391 MobiDBLite consensus disorder prediction 320 391 - -
Lja3g0350 391 SUPERFAMILY Ran binding protein zinc finger-like 207 243 IPR036443 -
Lja3g0350 391 SMART zf_4 151 177 IPR001876 -
Lja3g0350 391 SMART zf_4 215 239 IPR001876 -
Lja3g0350 391 Coils Coil 257 277 - -
Lja3g0350 391 MobiDBLite consensus disorder prediction 123 150 - -
Lja3g0350 391 SMART rrm1_1 11 92 IPR000504 GO:0003723
Lja3g0350 391 MobiDBLite consensus disorder prediction 244 277 - -
Lja3g0350 391 ProSiteProfiles Zinc finger RanBP2 type profile. 213 242 IPR001876 -
Lja3g0350 391 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 89 IPR000504 GO:0003723
Lja3g0350 391 PANTHER ZINC FINGER RAN-BINDING DOMAIN-CONTAINING PROTEIN 2 ZRANB2-RELATED 3 388 - -
Lja3g0350 391 CDD RRM_SARFH 12 94 - -
Lja3g0350 391 ProSiteProfiles Zinc finger RanBP2 type profile. 149 180 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0350 Lja-Chr3 3598407 3602858 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0350 - - gmx:100793376 512.686