Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lja3g0343 | ATGGCTTCGCCTGCGTGGCTGCCCCAGGAGCCACAGAACCCGCCGTTATCTGCTGAAACACCTCCGCCTGCGTCTTCTTCCGCTCCCGCGCCGGCCGCACCGTTCCCTTACGGCGCGCATCAAAATGTCAACGTTTCTGGGACTCCTCAGCAGTCTCCGTCCCATTCTGTGGTCAAGTCTAATGCGGGGAATGTTCCGGTTCCTGGTCACCCCTCACATGCGGCCCCTTCATTTTCATATAATATTTCCCAAACTGGCGCAGGTTTTCCTAGTAATCAGCATCCACAATCTACCACTAACATACCGGATTCTGTTGCACTGGATGCTAGTAAAATTTCATCTGCATCAAGTATCCGACATCCTGCCCCTGCTCATACTTTTATACCCACAATGCCGCTACCCTCTGAACCCCCTAACTATCGGCCAGCTACATCATGGATGCCAACTCCCCCAACTTTTCCTATGCATCATGTGATGGCTGGAGCTCCTGGGAATCCTGGCCCCCCTGGATTGGCATCAGCAACAATAATATCTTCTAATGCATCTATACCATCCACAAGCACAGATTCTTCCTCAGCTACAGTACTAAGACCAAATATGCCAGCTGCAGCCATTGCCTCAGATCCCACTGCCCCACCGAAAGGCTTACCCTATCAATCCATACCTTCCATGGTTGCTCCCCCTCAGGGATTTTGGTTACAGCCTCCACAGATGAGTGCAGTAAGGCCACCATTTTTTCAATATCCTGCCTCTTTTCCTGGCCCCTTTCCATTCCAAGCACGTGGTATTACTCCCTCTGCTGTTTCAGTACCTGATTCTTATCCTCCTGGTGTTACTCCTGCGGGTGCTGCCGGTAGCACTCCCGCCTCTTCTGCTTCCAATCATCAACCAGTGGGAACAGCTGGTTTGCAACCAGATGACAAGAGGAATGTCACGAAGAATGAGGATGCTGCTAATGATCAATTAGATGCCTGGACTGCTCATAAGACTGAAGCAGGAGTTGTATACTATTATAATGCCTTGACAGGAGAATCAACGTATGATAAACCTGCTGGCTTTAAAGGGGAGCCTCACCAAGTTTCTGTGCAGCCAACTCCAGCTTCAATGGTAGATTTGCCTGGTACTGATTGGATGTTGATTTCTACGAGCGATGGTAAAAAATATTACTACAACAATCAAACCAAGACAAGCTGCTGGCAAATCCCAAATGAGGTGGCTGAATTGAAGAAGAAGCAAGATGGTGATGTTACAAAAGATCATTTAATGTCAGTTCCAAATACTAATGTATTGTCTGATAGAGGGTCTGGAATGGTTACTCTGAATGCTCCTGCTATTAATACTGGTGGTCGTGATGCTGCAGCTCTTAAACCCTCTAGTGTACAGAGTTCACCATCGGCATTGGATTTGATCAAGAAGAAGCTGCAGGACTCAGGAGCACCTGTTGCTTCCTCTTCTATTCCTGTGCCATCTGTGCAAACAGGATCTGAAACGAATGGTTCAAAAGCAACTGAAACAACAGCTAAGGGCCTGCAGAATGATAACAACAAGGATAAACAAAAAGATGCTAATGGTGATGCTAACGTCTCTGATACATCCTCGGATTCTGAAGATGAAGATAGTGGACCTTCAAAAGAGGAGTGCATAATTCAATTTAAGGAGATGCTTAAGGAGCGTGGAGTGGCACCATTCTCAAAGTGGGAGAAAGAACTGCCAAAGATAGTATTTGATCCGCGTTTTAAGGCTATTCCAAGTTATTCTGCCAGGAGATCCTTGTTTGAGCATTATGTTAAAACTCGTGCTGAAGAAGAACGCAAAGAAAAACGTGCCGCACTGAGGGCTGCAATTGAGGGATTTAAGCAGTTACTGGATGAAGCTTCAGAGGATATTAATCAAAGTACTGATTATCAAACTTTTCGTAAGAAATGGGGAAACGATCCACGGTTTGAGGTATTGGACCGCAAGGAACGGGAGCACCTATTGAATGAAAGGGTGCTTCCTTTGAAGAAAGCTGCTGATGAAAAAGCTCGAGCAATACGTGCAGCTGCTTCTGCCAGTTTTAAGTCAATGCTCAAGGAACAAGGAGATATAACTTCTAACTCTCGTTGGTCCAGGGTTAAAGAAAGTTTAAGGGATGACCCAAGATATAAATCTGTGAGACATGAGGATAGGGAAGTTATGTTCAATGAGTATATATCTGAATTGAAAGCTGCTGAACATGCGGCAGAACGAGAGATCAAAGCTAAAAGGGAGGAGCAGGATAAGCTGCGGGAGAGAGAACGGGAGACGCGCAAAAGGAAGGAAAGAGAAGAACAGGAAATGGAAAGGGTCCGATTAAAAATTCGAAGGAAGGAGGCTGTTACTTCTTTTCAAGCTTTACTTGTGGAGACAATCAAAGATCCTCTGGCCTCATGGACAGAATCTAAGCCTAAATTAGATAAGGATCCTCAAGGACGTGCAAGTAATTCTGACCTTGATCCAGCTGACACAGAAAAACTCTTTCGGGAACACATTAAGATGCTTCAGGAACGTTGTGCACACGAGTTTAGAGCTCTCTTAGCTGAAGTCTTGACTTCTGAAGCCGCATCTCAAGAAACCGAGGATGGGAAAACACTGCTTAATTCATGGTCTACGGCGAAACGTCGTTTAAAATCTGATCCGAGATATAACAAGGTTCCGAGAAAAGAAAGAGAAGCTTTGTGGCGCCGGTATGCAGAGGATATGGTGCGGCGTCAAAAGTCGGCTCATGATTCAAGGGAAGAAAAACATACAGATGCAAAAGGTAGAAATCCCCTGGAATCGTCCAAACTTCCACCAGAGTCAGGGAGATCGCATGAAAGAAGATAA | 2844 | 0.4582 | MASPAWLPQEPQNPPLSAETPPPASSSAPAPAAPFPYGAHQNVNVSGTPQQSPSHSVVKSNAGNVPVPGHPSHAAPSFSYNISQTGAGFPSNQHPQSTTNIPDSVALDASKISSASSIRHPAPAHTFIPTMPLPSEPPNYRPATSWMPTPPTFPMHHVMAGAPGNPGPPGLASATIISSNASIPSTSTDSSSATVLRPNMPAAAIASDPTAPPKGLPYQSIPSMVAPPQGFWLQPPQMSAVRPPFFQYPASFPGPFPFQARGITPSAVSVPDSYPPGVTPAGAAGSTPASSASNHQPVGTAGLQPDDKRNVTKNEDAANDQLDAWTAHKTEAGVVYYYNALTGESTYDKPAGFKGEPHQVSVQPTPASMVDLPGTDWMLISTSDGKKYYYNNQTKTSCWQIPNEVAELKKKQDGDVTKDHLMSVPNTNVLSDRGSGMVTLNAPAINTGGRDAAALKPSSVQSSPSALDLIKKKLQDSGAPVASSSIPVPSVQTGSETNGSKATETTAKGLQNDNNKDKQKDANGDANVSDTSSDSEDEDSGPSKEECIIQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSYSARRSLFEHYVKTRAEEERKEKRAALRAAIEGFKQLLDEASEDINQSTDYQTFRKKWGNDPRFEVLDRKEREHLLNERVLPLKKAADEKARAIRAAASASFKSMLKEQGDITSNSRWSRVKESLRDDPRYKSVRHEDREVMFNEYISELKAAEHAAEREIKAKREEQDKLRERERETRKRKEREEQEMERVRLKIRRKEAVTSFQALLVETIKDPLASWTESKPKLDKDPQGRASNSDLDPADTEKLFREHIKMLQERCAHEFRALLAEVLTSEAASQETEDGKTLLNSWSTAKRRLKSDPRYNKVPRKEREALWRRYAEDMVRRQKSAHDSREEKHTDAKGRNPLESSKLPPESGRSHERR* | 948 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lja3g0343 | 947 | MobiDBLite | consensus disorder prediction | 76 | 97 | - | - | |
| Lja3g0343 | 947 | MobiDBLite | consensus disorder prediction | 859 | 879 | - | - | |
| Lja3g0343 | 947 | ProSitePatterns | WW/rsp5/WWP domain signature. | 377 | 402 | IPR001202 | GO:0005515 | |
| Lja3g0343 | 947 | SUPERFAMILY | FF domain | 775 | 844 | IPR036517 | - | |
| Lja3g0343 | 947 | SUPERFAMILY | FF domain | 539 | 604 | IPR036517 | - | |
| Lja3g0343 | 947 | SMART | FF_2 | 782 | 839 | IPR002713 | - | |
| Lja3g0343 | 947 | SMART | FF_2 | 841 | 906 | IPR002713 | - | |
| Lja3g0343 | 947 | SMART | FF_2 | 679 | 733 | IPR002713 | - | |
| Lja3g0343 | 947 | SMART | FF_2 | 544 | 598 | IPR002713 | - | |
| Lja3g0343 | 947 | SMART | FF_2 | 611 | 666 | IPR002713 | - | |
| Lja3g0343 | 947 | MobiDBLite | consensus disorder prediction | 1 | 97 | - | - | |
| Lja3g0343 | 947 | MobiDBLite | consensus disorder prediction | 478 | 544 | - | - | |
| Lja3g0343 | 947 | ProSiteProfiles | WW/rsp5/WWP domain profile. | 377 | 404 | IPR001202 | GO:0005515 | |
| Lja3g0343 | 947 | MobiDBLite | consensus disorder prediction | 805 | 827 | - | - | |
| Lja3g0343 | 947 | Gene3D | - | 363 | 419 | - | - | |
| Lja3g0343 | 947 | PANTHER | TRANSCRIPTION ELONGATION REGULATOR HOMOLOG | 103 | 936 | - | - | |
| Lja3g0343 | 947 | MobiDBLite | consensus disorder prediction | 880 | 929 | - | - | |
| Lja3g0343 | 947 | Gene3D | - | 320 | 362 | - | - | |
| Lja3g0343 | 947 | MobiDBLite | consensus disorder prediction | 8 | 30 | - | - | |
| Lja3g0343 | 947 | MobiDBLite | consensus disorder prediction | 41 | 61 | - | - | |
| Lja3g0343 | 947 | MobiDBLite | consensus disorder prediction | 859 | 947 | - | - | |
| Lja3g0343 | 947 | SUPERFAMILY | FF domain | 834 | 912 | IPR036517 | - | |
| Lja3g0343 | 947 | MobiDBLite | consensus disorder prediction | 478 | 510 | - | - | |
| Lja3g0343 | 947 | ProSiteProfiles | FF domain profile. | 679 | 733 | IPR002713 | - | |
| Lja3g0343 | 947 | ProSiteProfiles | WW/rsp5/WWP domain profile. | 319 | 352 | IPR001202 | GO:0005515 | |
| Lja3g0343 | 947 | Pfam | WW domain | 324 | 350 | IPR001202 | GO:0005515 | |
| Lja3g0343 | 947 | MobiDBLite | consensus disorder prediction | 284 | 300 | - | - | |
| Lja3g0343 | 947 | Coils | Coil | 608 | 628 | - | - | |
| Lja3g0343 | 947 | CDD | WW | 325 | 350 | IPR001202 | GO:0005515 | |
| Lja3g0343 | 947 | Gene3D | FF domain | 675 | 744 | IPR036517 | - | |
| Lja3g0343 | 947 | Gene3D | FF domain | 601 | 674 | IPR036517 | - | |
| Lja3g0343 | 947 | SUPERFAMILY | FF domain | 677 | 737 | IPR036517 | - | |
| Lja3g0343 | 947 | SMART | ww_5 | 372 | 404 | IPR001202 | GO:0005515 | |
| Lja3g0343 | 947 | SMART | ww_5 | 320 | 352 | IPR001202 | GO:0005515 | |
| Lja3g0343 | 947 | MobiDBLite | consensus disorder prediction | 278 | 311 | - | - | |
| Lja3g0343 | 947 | ProSiteProfiles | FF domain profile. | 544 | 598 | IPR002713 | - | |
| Lja3g0343 | 947 | PANTHER | TRANSCRIPTION ELONGATION REGULATOR 1 | 103 | 936 | IPR045148 | GO:0003712|GO:0070063 | |
| Lja3g0343 | 947 | SUPERFAMILY | WW domain | 376 | 408 | IPR036020 | GO:0005515 | |
| Lja3g0343 | 947 | SUPERFAMILY | WW domain | 324 | 354 | IPR036020 | GO:0005515 | |
| Lja3g0343 | 947 | SUPERFAMILY | FF domain | 603 | 672 | IPR036517 | - | |
| Lja3g0343 | 947 | CDD | WW | 382 | 404 | IPR001202 | GO:0005515 | |
| Lja3g0343 | 947 | Gene3D | FF domain | 529 | 600 | IPR036517 | - | |
| Lja3g0343 | 947 | MobiDBLite | consensus disorder prediction | 745 | 770 | - | - | |
| Lja3g0343 | 947 | ProSitePatterns | WW/rsp5/WWP domain signature. | 325 | 350 | IPR001202 | GO:0005515 | |
| Lja3g0343 | 947 | Pfam | FF domain | 847 | 903 | IPR002713 | - | |
| Lja3g0343 | 947 | Pfam | FF domain | 614 | 662 | IPR002713 | - | |
| Lja3g0343 | 947 | Pfam | FF domain | 682 | 730 | IPR002713 | - | |
| Lja3g0343 | 947 | Pfam | FF domain | 550 | 595 | IPR002713 | - | |
| Lja3g0343 | 947 | Coils | Coil | 731 | 786 | - | - | |
| Lja3g0343 | 947 | ProSiteProfiles | FF domain profile. | 608 | 666 | IPR002713 | - | |
| Lja3g0343 | 947 | Gene3D | FF domain | 840 | 906 | IPR036517 | - | |
| Lja3g0343 | 947 | Gene3D | FF domain | 779 | 839 | IPR036517 | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lja3g0343 | K12824 | - | gmx:100816454 | 1354.35 |