Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0331 ATGAAAAGAGGACACTACTTGACTCTGCTCATATCCTCTCTTCGTAACCGTAACCCTCCTCCGTTAGCGCCGCCACCTTCATTCCATTTTCGCGGCGTCTCCTCCTCTTCCAGATCTCCGGCCACCGCCATGCCTGGACCAGACGCTCTCGATTTGGAGTGGCCGGCGAAGCGCGTCAGAGACACCTTCGTCAACTTCTTCAAGGAAAGCAAGAACCATGTGTACTGGCAGTCTAGCCCTGTCGTTCCCTTCAACGACCCCACCCTCCTCTTTGCCAACGCTGGTATGAACCAGTTCAAGCCAATATTTCTGGGAACTGCTGATCCAAACACTGACTTGAGCAAGCTGTCTCGTGCTTGCAATACCCAAAAATGCATACGAGCTGGTGGTAAACACAATGATCTTGACGATGTAGGAAAAGATACCTACCATCACACCTTCTTTGAGATGCTCGGCAATTGGTCGTTTGGGGATTACTTTAAAACAGAAGCCATTGGCTGGGCGTGGGAACTTCTAACCAAAGTTTATAAATTACCATCAGATCGGATTTATGCAACCTATTTTGGTGGTGATGAGAAGGCTGGTCTTGCCCCTGATACTGAGGCTAGAGATATATGGTTACAGTTTTTGCCACCTGGACGGGTGCTTCCTTTTGGCTGTAAAGACAATTTCTGGGAGATGGGTGATACTGGTCCTTGTGGACCTTGCACAGAAATACATTTTGACAGAATCGGTAACCGTGACGCTGCATCATTGGTTAATAATGATGATCCTACCTGCATTGAGATATGGAACCTTGTCTTTATTCAGTTCAATAGGGAGGCTGATGTCTCTCTTAAATCTCTGCCTGCAAAGCATGTTGATACAGGAATGGGTTTTGAACGATTGACCTCTATACTACAGAACAAAATGAGCAATTATGACACCGACGTCTTCTTGCCTATCTTTGATGCTATTCAGCTGGCAACTGGTGCTCGGCCATATTCTGGGAAAGTTGGAGCAGATGATGCAGATAAAGTTGACATGGCATACAGAGTTGTTGCCGATCACATCAGAACTCTGTCATTTGCTATTGCTGATGGGTCTCGCCCTGGTAATGAGGGCCGTGAGTATGTTCTGAGGCGTATACTCCGTCGAGCTGTTCGGTATGGACGTGAAGTGCTAAAAGCTAAAGAGGGATTTTTCAATGGGCTTGTAAGCGTTGTGGTGAATGTGATGGGTGATGTTTTTACTGAGCTAAAACAACAGGAAGCGCACATTAGGGACATAGTTAAAGAGGAGGAGGAAAGTTTTGGCAGAACATTAATTAAGGGGATTGAAAAATTTGAGTCATCTGTTCGACATGTTCAGGGAAAGCTTCTGAGTGGGGAGGAAGCATTTGTCTTGTGGGATACATTTGGGTTCCCGTTAGATCTGACTCAGTTGATGGCTGAAGAAAAGGGATTACTTGTTGATGTGGAAGGTTTTAATAGTGCCATGGAAGCTGCAAGAGAGAGATCAAGAAATGCTCAAACAAAGCAAGCTGGTGGTGCCATTGTCATGGATGCTGATGCTACCTCTGCATTGCACAAAAAAGGCATTCTCCCAACAGATGATAGCTTCAAATATGTTTGGTTCAAGGACCATCAGAGTGGGGTAAAAGCAATATATACTGGTTCTGAGTTTGTGGATTCTGTTAATACAGATGGTGACATCGGTGTTATTCTGGAATCTACAAGCTTCTATGCTGAGCAAGGTGGTCAGATTTTTGACACTGGATCACTTGAGTGTCAACATGCTTCATTTCAAGTTCGTAATGTTCAAGTTTTTGGAGGCTTTGTCCTTCACATTGGTAATGGAACTGGTATCTCTGTTGGTGACAAAGTAGTATGTAAGGTTGACTATGGAAGACGTGCCCTTATAGCCCCAAACCATACCTGCACACACATTTTAAATTTTGCTCTTCGGGAAGTACTAGGTGATCATGTTGACCAGAAAGGATCTATTGTTCTTCCTGAAAAATTGAGATATGATTTTTCTCATGGCAAGCCTGTTGATGCTGATAACTTGAGGAGAATCGAGTCAATTGTTAATGAGCAAATAAAAGCTGAATTGGATGTAAATGCAAAGGAGGTTACTCTTGCCGATGCCAAGCGAATCAATGGTTTGCGAGCTGTTTTTGGAGAAGTCTATCCTGATCCGGTTCGAGTTGTATCAGTTGGAGAAAAAGTTGAGGATCTCCTTGCTGATCCCGGGAATGATAAATGGTTATCGATATCATCAGAATTATGTGGCGGTACCCATATTTCAAACACACGTGAGGCTAAAGCCTTTGCACTTTTGTCTGAGGAGGGAATTGCAAAAGGAATCCGCAGAATAACAGCTGTTACAACTGAGCGTGCTTATGACGCAATGAAAACGGCCGATGAATTTGAGCAGGAAGTAGATCATGCAGCTAAATTAGAAGGAAGTTTGCTGGAAGAGAAAGTTTCATATCTGAAAAGCAATGTGGAAACATTATCAATTCCAGCAGCCAAGAAAGCTGACATCAAGACCAAGATAGCCCGGCTTCAGGATCAAGTGAGAAAAGCACAAAAGCAGGTTGCCGAAGAGAACAAACGTAAAGCTGTAACAATCACAGTTGAGAAGGCTGAACTCGCTGCTTCAGACGGGAAAAAATTCTGCATATCTCATGTTGATGTTGGTCTGGATGTAGCTGCAGTTCGTGAGGCCGTTACGAAAGTCATGGACCAGAAGGGGTTATCCGTGATGGTTTTTAGCACTGATAAATCTACCAACAAGGCTGTTATTTGTGCTGGGGTTCCGGAGAAAGGAGATAAAGGTAAGCTAGATGTGTCAGAGTGGCTGAGTAATGCTTTGGAGCCACTAAAAGGGAGATGTGGTAAAGGAAAAGGTGGTCTTGCAACAGGACAGGGTACCGATGCTTCACACGTAAATGAGGCTATGGACTTTGCTACAAAATTTGCATCCATGAAATTAACTTAA 2985 0.4409 MKRGHYLTLLISSLRNRNPPPLAPPPSFHFRGVSSSSRSPATAMPGPDALDLEWPAKRVRDTFVNFFKESKNHVYWQSSPVVPFNDPTLLFANAGMNQFKPIFLGTADPNTDLSKLSRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKTEAIGWAWELLTKVYKLPSDRIYATYFGGDEKAGLAPDTEARDIWLQFLPPGRVLPFGCKDNFWEMGDTGPCGPCTEIHFDRIGNRDAASLVNNDDPTCIEIWNLVFIQFNREADVSLKSLPAKHVDTGMGFERLTSILQNKMSNYDTDVFLPIFDAIQLATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSRPGNEGREYVLRRILRRAVRYGREVLKAKEGFFNGLVSVVVNVMGDVFTELKQQEAHIRDIVKEEEESFGRTLIKGIEKFESSVRHVQGKLLSGEEAFVLWDTFGFPLDLTQLMAEEKGLLVDVEGFNSAMEAARERSRNAQTKQAGGAIVMDADATSALHKKGILPTDDSFKYVWFKDHQSGVKAIYTGSEFVDSVNTDGDIGVILESTSFYAEQGGQIFDTGSLECQHASFQVRNVQVFGGFVLHIGNGTGISVGDKVVCKVDYGRRALIAPNHTCTHILNFALREVLGDHVDQKGSIVLPEKLRYDFSHGKPVDADNLRRIESIVNEQIKAELDVNAKEVTLADAKRINGLRAVFGEVYPDPVRVVSVGEKVEDLLADPGNDKWLSISSELCGGTHISNTREAKAFALLSEEGIAKGIRRITAVTTERAYDAMKTADEFEQEVDHAAKLEGSLLEEKVSYLKSNVETLSIPAAKKADIKTKIARLQDQVRKAQKQVAEENKRKAVTITVEKAELAASDGKKFCISHVDVGLDVAAVREAVTKVMDQKGLSVMVFSTDKSTNKAVICAGVPEKGDKGKLDVSEWLSNALEPLKGRCGKGKGGLATGQGTDASHVNEAMDFATKFASMKLT* 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0331 994 SUPERFAMILY ThrRS/AlaRS common domain 626 800 IPR018163 GO:0000166
Lja3g0331 994 Pfam DHHA1 domain 849 988 IPR003156 GO:0003676
Lja3g0331 994 SUPERFAMILY Translation proteins 554 626 IPR009000 -
Lja3g0331 994 CDD AlaRS_core 56 303 - -
Lja3g0331 994 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 308 507 IPR018162 GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419
Lja3g0331 994 TIGRFAM alaS: alanine--tRNA ligase 59 971 IPR002318 GO:0000166|GO:0005737
Lja3g0331 994 Pfam tRNA synthetases class II (A) 59 628 IPR018164 GO:0000166|GO:0004813|GO:0005524|GO:0006419
Lja3g0331 994 Gene3D - 627 803 - -
Lja3g0331 994 PANTHER ALANYL-TRNA SYNTHETASE 38 993 - -
Lja3g0331 994 SUPERFAMILY Class II aaRS and biotin synthetases 56 307 IPR045864 -
Lja3g0331 994 PRINTS Alanyl-tRNA synthetase signature 133 144 IPR002318 GO:0000166|GO:0005737
Lja3g0331 994 PRINTS Alanyl-tRNA synthetase signature 261 272 IPR002318 GO:0000166|GO:0005737
Lja3g0331 994 PRINTS Alanyl-tRNA synthetase signature 369 382 IPR002318 GO:0000166|GO:0005737
Lja3g0331 994 PRINTS Alanyl-tRNA synthetase signature 345 361 IPR002318 GO:0000166|GO:0005737
Lja3g0331 994 PRINTS Alanyl-tRNA synthetase signature 288 301 IPR002318 GO:0000166|GO:0005737
Lja3g0331 994 MobiDBLite consensus disorder prediction 21 48 - -
Lja3g0331 994 PANTHER BNACNNG61840D PROTEIN 38 993 - -
Lja3g0331 994 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 728 786 IPR012947 GO:0004812|GO:0005524|GO:0043039
Lja3g0331 994 Gene3D Bira Bifunctional Protein; Domain 2 55 304 IPR045864 -
Lja3g0331 994 Gene3D - 537 626 - -
Lja3g0331 994 Gene3D - 881 989 - -
Lja3g0331 994 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 54 800 IPR018165 GO:0003676|GO:0004813|GO:0005524|GO:0006419
Lja3g0331 994 Coils Coil 840 867 - -
Lja3g0331 994 SMART tRNA_SAD_4 728 787 IPR012947 GO:0004812|GO:0005524|GO:0043039
Lja3g0331 994 Hamap Alanine--tRNA ligase [alaS]. 54 993 IPR023033 GO:0004813
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0331 Lja-Chr3 3428317 3445414 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0331 K01872 - gmx:100788271 1706.42