Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0315 ATGCCTCCCGCGCGCCGACGCGGAGCGAACAAGGCCAAGGCGAACGGGCACTTGAGTTTGGGCGATCTCGTGCTCGCGAAGGTTAAGGGCTTCCCCGCTTGGCCTGCCAAGATAAGCAGACCTGAAGATTGGGATAAAGCTCCTGATCCCAAGAAATATTTTGTTCAATTCTTTGGCACCGAAGAAATAGCTTTCGTTACACCTGCAGACATTCAGACATTCACCAGTGAGTCAAAAAATAAGTTATCTGCTCGTCTTCAAGGCAAAACTGTCCAGAAACACTTTGTTCAAGCTGTGAAGGAAATCTGTGCAGCTTTTGATGAGAATCAGAAACTGAAAGCTAGTGGTTTGGCAGATGACACCGATGATTCTCGTCTTGGTTCAGAGGCTCCTTCTGTTGATGGTGTAGTGGGTAACCTAAAGGATGCCGCTGATGCTGTGGTATCAAATGCAGAAAAAGATGACATCTGCATGGACAATGTTGACCCTAATTTGGAGCACTGTACACAAAGAATAGAAGAAAGTGGTAACCAAGATGAAAAACTCTCTGAATCTGGCCATCCAAATGATAGTTCTGGTTCGTTGCCTGTGATCAAAAGTAAATTACCCAATGGTTCAGAGATAATGAATAAGTCTAGCAAGTCCAGTGTTAAAGGTTCAAGTAGTGTTGATGATAATGGACATGGTGTTCTAAAAAATGGAAGCAAGACAAGAAAGGTTGTTACTGGCTCAAAGAAACAAAGTGAGGCTGCAGATGATATAAATAAAAATGGTGGATCATCTACTGGAAAAAAATTGAAGGAGGGAAATTCTACTGGTGGTGCTGATCGTTCCAGGTCTGGAGTGACATTGAAAGATGGGAAAAAAAGGAAAATTGCACCATCTGTTAAATCAGATGCTCCAGAAACTCTTAAATCAGGTTCTAATGGTAATGCTGGAGAAAAAAGTAAGAACTTGATACCTATTAAAACAAGTCCTAAGGTAAAAGAGGACTTACAGGAGTCGGAGGAAACTGATGGAAAAAGCTCTAGCATGGGAAAGAAGGTCCAATTGCTTGCAAAGCATAATGTGAGAGCAAATGAATCCTTACATGCTACCAAGAGGTTGAAGCGTGCAGATGCCAAAGATGATTCAACTTTAGGATACTTACCGAAGGATGTGAAAAGTGCTCCGCCTGGTTCTATTGCTGTTGAAGGCAAAGCATTTAAAAAAATGGAGTTAAAAAGGTCCACATCAAATTTAAAAACAGAAAAAAGCGTGCCATCAAGGGCTCAAGTTGGTGTTGTCGGGTCTGATGATTCTGTCCATGAGGTGCTACCTGAGACCAACCATCATAGCAAAGTTCAGCAAGCTATGCCTGATTCTGATTGCATTGCTTCAGATGAAAAGAAAGACCAGAGTGCTCTTAGACTAAAAGGTGATAAGAATAATGTTAAACAAGTACAGAAGAAACGTAGAGTTGTTTGCGTTTATGATGATGAGGACGATGATGAACCTAAAACTCCTGTTCATGGAGGACCTGCAAAAACTATGAAGTCACCTATTGTTTCAGAGGTCAAGAAGAGCAATGATGCACACTTAGAGAGGTCTGATGATACTCAGCTGGCCCCCAGAAAATCTAGTGAACCAGAGAATATCCGTTTGAAAGAACCATCTTCTCAATTACGTAATGACTCTTCGTCGATTAAGCAGCCTAAGAAAGACAAAGGTGATGAAGTCATTCCTGTGCACGCTCCTTGTGGTCATGATAAATTAGATCCGAAGCAGACTGTCTCTAAGATGGCAAAATTAAGCTCTGCCTCTCCAGTAAAATCACCTCAGTCACTTCCTGCAATGAAGCCCAATTTGGACCGGAATAAATCTTCCAAACCTTTGCTTAAAGGCTCCAGCAATGCTACTCAAAAGAAGGTTGATCATGCATCTTCAAAGTCTTCACACAACCTGAGCTCTTCTCAGAATCAAGTCGCAACGCATAAAAAGAAGCTTGCATCTTCATCAGAAACTTCTAAAACCACTCCCAAGACATTACCACAAGCAGTTGAAGTTCCTCCTTCAACGCTTGGTTTTAAGGAACCTGATGCTCTTCATGTTGATAGATTGGAGGTGAGTATGGAGGAAAAGAGTATTATGTATGCCGGTTCTGGGACTCCGGAATCTGCAAGAACTATGAGGCATCTTATTGCGGTTGCCCAGGCAAAAAGGAAACAAGCTCATTCCCAATATCTTACTTTAGGCATTCACAATTTTCAAGGGGGAACTCCTAGTCCCTCCAGTGTTCAGCCTATTCTTTCAATTTCAAATAGTTTTGTACAGACAGATGTGCAGGGTGTTTACGAGCACACTGCATTGGCTTCTCCACCAACTAATGAGCATCACTCTGCCTCTCGGAATCTACTTGATGCTGATGAAATTGAGGAGAGAAGAGTTGGTTCGGCGCAACGGGGTGTAGGAGGCTCGTTGAGTGGTGGTACAGAAGCTGCTGTTGCTCGTGATGCTTTCGAAGGAATGATTGAGACTTTGTCAAGGACCAAGGAAAGTATTGGGCGTGCAACTCGTCTTGCAATTGATTGTGCCAAGTATGGCATTGCCAATGAGGTTGTTGAGGTTCTCATCCGAAAGCTGGAAAATGAAACAAGTTTTCATCGCAAAGTGGATTTGTTTTTTCTTGTTGATTCTATCACGCAGTGCTCACATAGTCATAAAGGCATTGCTGGAGCCTCCTACATCCCTACAGTTCAAGCTGCATTGCCACGTCTACTTGGTGCTGCTGCTCCCCCTGGAGCTAGTGCCCGTGAAAATCGCCGTCAATGTCTCAAGGTTTTGAGGCTGTGGCTAGAGAGGAAAATATTTCCTGAATCAGTTATTCGCCGATACATGGATGATATTGGAGTTTCAAATGATGATATGACAGTTAGCCTTTCTCTTAGGCGGCCTTCTCGAGCAGAGCGATCTGTTGATGACCCTATAAGAGAAATGGAAGGCATGCTTGTCGATGAATATGGAAGTAATGCTACATTTCAGCTACCTGGCTTTTTATCTTCTCACGCGTTTGAAGATGAAGATGAAGATGATTTACAAATCAATTCGTGTAAGGATACACAAGATGCATCTCCTGCAGATCCCACACTTACGCTTGGAGAATCAGAAACTTCTACTGTTACCCCAAATGATAAGCGCCACTGTATCTTGGAGGACGTGGATGGTGAGCTAGAAATGGAAGATGTTTCAGGTCACCCAAAGGATGAGAAGCCAGTATTTTTGAACAGTTTTGATGAGATAGACGTGCAAGTTCAGCGGACAGATAGGAATTTAGATCCAACTTCAAACAATTTGGAAGAGATATTAGCTACTCCGGAGGGATCTCCTCCATTGCCACTTGATTCACCTCCTCCTCCCCCACCTTTACCTTCTTCACCTCCGCCACCACCACCTCCATTATCTCCATCTCCATCTCCTCCCCCACCCCCACCACCTCCAATATTGCAGCCACCACCCCCTCCTCGACCACCTGCAGCCCCCCCAGTGCCATTAATTCCTCAATCATCTGGTTGCGCTCGGCCTACACTTCTTTCCCAGTCATTAATACCACCTCAGTCATCACATCAGTCATCCCCACAGTTAGGGTATCAGCAGAATGTACCTCATGACTTTAATGGCACAACAAGTTCCTCTATGCAGGGTAATCAAATAGTTCAAATGGCTGGAAGTTCTTTTTCTGGAGGCCACAACAATGCGGTTGTTAAGAATGAAATATTTCCACAGCCATCTGCTTTTGCCCCAACTCCAGGCTGCAACTCCCAGGAACCTTCTGGTTTTAATCCCTCAAGGCAATTAGAATACGGACAGAATGATGTGTATTTAAATGCTCAGGTTCCTCAGCCTAACCATCAATTTCAGCCGGGCAACCCGCCATTTTCTCAAAGACACGCACATCCTGCTCCACCTCAAAATACATCAAATCAGTACGCTTATCCAAATCATACAGTTCAGCAACATCTTCCACATTCATTCCATCCTGCCTTCCCTATACAATCCCTTCAAGATGGCCGGAGGCAATTTGTTGCTGAGGAGCAATGGAGAATGCCATCAAATGAATTCAAAACAAACAATCAACATGGTGTATGGATAGGGAGAAATCCTTCATGCCCCGGTCCCCCCTTTGTGCAAGAAGGTAATTTCCGACCACAACTTGAAAGACCACCAGTAAGCAATGTCGGTTTTCAGCGACCAATTTCAGGCAACCTACCTAGCGCTCCAATATCAGGACACGGTGTTCCACAGATGTTGCCTTGTAGACCTGATATTCCTACTGTTAACTGTTGGAGACCGACTTGA 4335 0.4392 MPPARRRGANKAKANGHLSLGDLVLAKVKGFPAWPAKISRPEDWDKAPDPKKYFVQFFGTEEIAFVTPADIQTFTSESKNKLSARLQGKTVQKHFVQAVKEICAAFDENQKLKASGLADDTDDSRLGSEAPSVDGVVGNLKDAADAVVSNAEKDDICMDNVDPNLEHCTQRIEESGNQDEKLSESGHPNDSSGSLPVIKSKLPNGSEIMNKSSKSSVKGSSSVDDNGHGVLKNGSKTRKVVTGSKKQSEAADDINKNGGSSTGKKLKEGNSTGGADRSRSGVTLKDGKKRKIAPSVKSDAPETLKSGSNGNAGEKSKNLIPIKTSPKVKEDLQESEETDGKSSSMGKKVQLLAKHNVRANESLHATKRLKRADAKDDSTLGYLPKDVKSAPPGSIAVEGKAFKKMELKRSTSNLKTEKSVPSRAQVGVVGSDDSVHEVLPETNHHSKVQQAMPDSDCIASDEKKDQSALRLKGDKNNVKQVQKKRRVVCVYDDEDDDEPKTPVHGGPAKTMKSPIVSEVKKSNDAHLERSDDTQLAPRKSSEPENIRLKEPSSQLRNDSSSIKQPKKDKGDEVIPVHAPCGHDKLDPKQTVSKMAKLSSASPVKSPQSLPAMKPNLDRNKSSKPLLKGSSNATQKKVDHASSKSSHNLSSSQNQVATHKKKLASSSETSKTTPKTLPQAVEVPPSTLGFKEPDALHVDRLEVSMEEKSIMYAGSGTPESARTMRHLIAVAQAKRKQAHSQYLTLGIHNFQGGTPSPSSVQPILSISNSFVQTDVQGVYEHTALASPPTNEHHSASRNLLDADEIEERRVGSAQRGVGGSLSGGTEAAVARDAFEGMIETLSRTKESIGRATRLAIDCAKYGIANEVVEVLIRKLENETSFHRKVDLFFLVDSITQCSHSHKGIAGASYIPTVQAALPRLLGAAAPPGASARENRRQCLKVLRLWLERKIFPESVIRRYMDDIGVSNDDMTVSLSLRRPSRAERSVDDPIREMEGMLVDEYGSNATFQLPGFLSSHAFEDEDEDDLQINSCKDTQDASPADPTLTLGESETSTVTPNDKRHCILEDVDGELEMEDVSGHPKDEKPVFLNSFDEIDVQVQRTDRNLDPTSNNLEEILATPEGSPPLPLDSPPPPPPLPSSPPPPPPPLSPSPSPPPPPPPPILQPPPPPRPPAAPPVPLIPQSSGCARPTLLSQSLIPPQSSHQSSPQLGYQQNVPHDFNGTTSSSMQGNQIVQMAGSSFSGGHNNAVVKNEIFPQPSAFAPTPGCNSQEPSGFNPSRQLEYGQNDVYLNAQVPQPNHQFQPGNPPFSQRHAHPAPPQNTSNQYAYPNHTVQQHLPHSFHPAFPIQSLQDGRRQFVAEEQWRMPSNEFKTNNQHGVWIGRNPSCPGPPFVQEGNFRPQLERPPVSNVGFQRPISGNLPSAPISGHGVPQMLPCRPDIPTVNCWRPT* 1445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0315 1444 SUPERFAMILY Tudor/PWWP/MBT 13 109 - -
Lja3g0315 1444 ProSiteProfiles PWWP domain profile. 20 77 IPR000313 -
Lja3g0315 1444 MobiDBLite consensus disorder prediction 1030 1059 - -
Lja3g0315 1444 MobiDBLite consensus disorder prediction 1184 1224 - -
Lja3g0315 1444 MobiDBLite consensus disorder prediction 173 350 - -
Lja3g0315 1444 MobiDBLite consensus disorder prediction 561 590 - -
Lja3g0315 1444 Pfam CID domain 832 957 IPR006569 -
Lja3g0315 1444 MobiDBLite consensus disorder prediction 440 689 - -
Lja3g0315 1444 SMART PWWP_4 18 75 IPR000313 -
Lja3g0315 1444 MobiDBLite consensus disorder prediction 187 228 - -
Lja3g0315 1444 CDD HDGF_related 18 105 IPR035496 -
Lja3g0315 1444 MobiDBLite consensus disorder prediction 457 503 - -
Lja3g0315 1444 SMART 558neu5 832 963 IPR006569 -
Lja3g0315 1444 MobiDBLite consensus disorder prediction 327 343 - -
Lja3g0315 1444 MobiDBLite consensus disorder prediction 301 315 - -
Lja3g0315 1444 Gene3D - 10 116 - -
Lja3g0315 1444 PANTHER PROTEIN HUA2-LIKE 1 1 1444 - -
Lja3g0315 1444 MobiDBLite consensus disorder prediction 622 679 - -
Lja3g0315 1444 PRINTS Proline rich extensin signature 1163 1179 - -
Lja3g0315 1444 PRINTS Proline rich extensin signature 1132 1153 - -
Lja3g0315 1444 PRINTS Proline rich extensin signature 1120 1132 - -
Lja3g0315 1444 MobiDBLite consensus disorder prediction 253 278 - -
Lja3g0315 1444 MobiDBLite consensus disorder prediction 519 551 - -
Lja3g0315 1444 Gene3D - 824 969 IPR008942 -
Lja3g0315 1444 MobiDBLite consensus disorder prediction 1292 1320 - -
Lja3g0315 1444 PANTHER HEPATOMA-DERIVED GROWTH FACTOR-RELATED 1 1444 - -
Lja3g0315 1444 MobiDBLite consensus disorder prediction 592 615 - -
Lja3g0315 1444 MobiDBLite consensus disorder prediction 117 137 - -
Lja3g0315 1444 MobiDBLite consensus disorder prediction 281 296 - -
Lja3g0315 1444 MobiDBLite consensus disorder prediction 1113 1224 - -
Lja3g0315 1444 MobiDBLite consensus disorder prediction 1030 1057 - -
Lja3g0315 1444 MobiDBLite consensus disorder prediction 1122 1177 - -
Lja3g0315 1444 Pfam PWWP domain 21 106 IPR000313 -
Lja3g0315 1444 ProSiteProfiles CID domain profile. 825 966 IPR006569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0315 Lja-Chr3 3274540 3287337 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0315 - - lja:Lj3g3v3523870.1 2107.41