Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0314 ATGAGAGGCATTCTCCGAAGCACGAAGCTAATCGGGAACCAGTTCCTCCATGGAAGGAGAACTGAATTCACACAATGGACTGCAAATCGATCCTACGGCCTGATCCCAATGGTGATTGAGCACTCTTCCCGAGGCGAACGAGCCTACGACATCTTCTCTCGCCTTCTCAAGGAGCGCATCATCTGCATCAACGGACCCATCTCCGACGACACCGCTCATGTCGTCGTCGCTCAGCTCCTCTTCCTCGAATCCGAAAACCCTTCCAAACCTATCAACATGTATCTCAATTCTCCTGGTGGCGCCGTCACTGCAGGGCTTGCAATTTATGATACTATGCAGTACATTCGGTCTCCAATCAATACGATCTGTTTAGGCCAAGCTGCGTCCATGGGTTCTCTCCTATTGGCTGCGGGTGCCAAGGGTCAGAGGCGTTCCCTTCCCAATGCTTCTATCATGATTCACCAGCCCTCTGGGGGTTATAGTGGCCAGGCAAAGGATATCGCCATTCATACTAAGCAGATTGTTCGGGTTTGGGATTTGCTGAATGATTTGTACGCCAAGCACACGGGCCAGTCGATTGAGCTGATTCAGAAGAATATGGACAGGGATTATTTCATGACTCCAGAAGAGGCGAAGGAGTTTGGGCTTATTGATGAGGTTATTGATCAGAGACCAATGACTTTGGTATCTGATGCCGTTGGTAATGAAGGCAAAGATAAAGGTTCGAATTAG 732 0.4932 MRGILRSTKLIGNQFLHGRRTEFTQWTANRSYGLIPMVIEHSSRGERAYDIFSRLLKERIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPGGAVTAGLAIYDTMQYIRSPINTICLGQAASMGSLLLAAGAKGQRRSLPNASIMIHQPSGGYSGQAKDIAIHTKQIVRVWDLLNDLYAKHTGQSIELIQKNMDRDYFMTPEEAKEFGLIDEVIDQRPMTLVSDAVGNEGKDKGSN* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0314 243 Gene3D - 22 228 - -
Lja3g0314 243 PRINTS Clp protease catalytic subunit P signature 50 65 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lja3g0314 243 PRINTS Clp protease catalytic subunit P signature 90 110 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lja3g0314 243 PRINTS Clp protease catalytic subunit P signature 121 138 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lja3g0314 243 PRINTS Clp protease catalytic subunit P signature 142 161 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lja3g0314 243 PRINTS Clp protease catalytic subunit P signature 199 218 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lja3g0314 243 Pfam Clp protease 44 223 IPR023562 -
Lja3g0314 243 ProSitePatterns Endopeptidase Clp serine active site. 121 132 IPR018215 -
Lja3g0314 243 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 16 242 IPR023562 -
Lja3g0314 243 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 16 242 - -
Lja3g0314 243 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 34 224 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lja3g0314 243 SUPERFAMILY ClpP/crotonase 42 225 IPR029045 -
Lja3g0314 243 CDD S14_ClpP_2 50 220 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lja3g0314 243 ProSitePatterns Endopeptidase Clp histidine active site. 143 156 IPR033135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0314 Lja-Chr3 3270468 3272439 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0314 K01358 - gmx:100782585 412.535