Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0277 ATGGGAAACCAAGATACTTGGAAAGGTGTCACAAAGCAGGCCAATCCTGGGAAAGCTACTATATTGGCTCTTGGCAAGGCTTTCCCTCACCAACTTGTCATGCAAGAGTATTTAGTTGATGGATATTTCAGGGACACTAACTGTGACAATCCTGAGCTCAAGCAGAAACTCACTAGACTTAGCAAGACAACCACAGTGAGAACAAGGTACGTGGTTATGTCTGAGGAGATACTGAAAAAGTACCCGGAACTTGCGGTTGAAGGCACCCCCACTGTAAAGCAAAGGCTAGAGATATGCAACAAAGCGGTGACAGAAATGGCAATTGAAGCTTCCCAAGTCTGCATCAAAAGCTGGGGAAGAGCTTTATCAGACATAACCCATGTGGTTTATGTGTCATCTAGTGAAGCTAGACTACCTGGTGGTGACCTCTACCTAGCCAAAGGACTTGGACTGAACCCTGATACTAAACGAACCATGCTCTATTTTGCGGGTTGTTCTGGAGGTGTGGCTGGCCTAAGAGTTGCAAAAGACATAGCAGAGAACAACCCGGGAAGCCGAGTGCTGCTCACTACTTCTGAAACTACAATCATTGGGTTCAAGCCACCAAGTGCAGATAGACCCTATGATCTTGTTGGGGTGGCACTTTTTGGGGATGGTGCTGGTGCCATGATAATTGGCTCAAACCCAGTATTGGAAACTGAGAAGCCTCTCTTTGAGCTTCACACAGCAGTTCAGGAGTTTTTGCCAGACACCGAGAAGAAAATAGATGGCAGGCTGACAGAGGAAGGGATAAGCTTCAAGCTAGCAAGGGAACTTCCTCAGATAATTGAAGACACTGTGGAGGGGTTCTGTGAGAAACTAATGGGTGTCGTCGGGTTCCAAAACAAGGAGTACAACAACCTGTTTTGGGCTGTGCATCCAGGAGGGCCAGCAATCTTGAATCGCATTGAGAAGAAGCTTGATTTGCTGCCAGAGAAGCTGAATGCAAGTAGAAGAGCTCTCATGGATTTCGGCAACGCAAGCAGCAACACCATTGTTTATGTGCTGGAGTATATGATGGAAGAGGGGCTCAAGATTAGAAAGGGTGGTGAAGAAGATCCTGAATGGGGCTTGATACTTGCTTTTGGACCTGGGATTACTTTTGAGGGAATTCTTGCTAGGAACTTGGGTGCTTGA 1176 0.4668 MGNQDTWKGVTKQANPGKATILALGKAFPHQLVMQEYLVDGYFRDTNCDNPELKQKLTRLSKTTTVRTRYVVMSEEILKKYPELAVEGTPTVKQRLEICNKAVTEMAIEASQVCIKSWGRALSDITHVVYVSSSEARLPGGDLYLAKGLGLNPDTKRTMLYFAGCSGGVAGLRVAKDIAENNPGSRVLLTTSETTIIGFKPPSADRPYDLVGVALFGDGAGAMIIGSNPVLETEKPLFELHTAVQEFLPDTEKKIDGRLTEEGISFKLARELPQIIEDTVEGFCEKLMGVVGFQNKEYNNLFWAVHPGGPAILNRIEKKLDLLPEKLNASRRALMDFGNASSNTIVYVLEYMMEEGLKIRKGGEEDPEWGLILAFGPGITFEGILARNLGA* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0277 391 Gene3D - 5 236 IPR016039 GO:0016746
Lja3g0277 391 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 13 389 IPR011141 GO:0009058|GO:0016747
Lja3g0277 391 PANTHER TYPE III POLYKETIDE SYNTHASE B 13 389 - -
Lja3g0277 391 Gene3D - 237 390 IPR016039 GO:0016746
Lja3g0277 391 CDD CHS_like 19 385 - -
Lja3g0277 391 SUPERFAMILY Thiolase-like 236 387 IPR016039 GO:0016746
Lja3g0277 391 Pfam Chalcone and stilbene synthases, N-terminal domain 11 229 IPR001099 -
Lja3g0277 391 SUPERFAMILY Thiolase-like 13 231 IPR016039 GO:0016746
Lja3g0277 391 Pfam Chalcone and stilbene synthases, C-terminal domain 239 388 IPR012328 -
Lja3g0277 391 PIRSF PKS_III 8 391 IPR011141 GO:0009058|GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0277 Lja-Chr3 2786867 2788699 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0277 87 376 Miscellaneous Gene Families AT4G34250 25.857 3.32e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0277 - - vun:114168705 686.026