Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0255 ATGGCTGCCAATACTGAAACTGCTCAATCCAACATTGTTGCTCCTGCAAAGAAGCCTCTTCCCGCTGCTAAGAACGTTGATTCTCAATCTGTTCTCAAAAGGCTGCAATCTGAATTGATGGCTTTGATGATGAGTGGAGATTCTGACATATCTGCTTTTCCTGAGGAGGACAACATTTTCATCTGGAAAGGAACAATCAAAGGAAGCAAAGAAACCGTTTTTGAAGGCACTGAGTACAAGTTATCCCTTTCATTTCCAAATGATTATCCTTTTAAGGCTCCCAAAGTCAAGTTTGAAACAACTTGCTTCCATCCCAATGTTGATGTCCAAGGCAACATATGCTTGGACATACTTCAGGATAAGTGGTCCTCTGCATATGATGTGAGGACAATTCTGTTATCCATCCAAAGTCTGCTTGGAGAGCCAAATATTAGTTCACCACTAAATCCACAAGCAGCACAGCTTTGGGGCAATCAAGAAGAATACAGGAAGATGGTGGAGAAGTTGTGCAAATTTCAAGATGCTTAG 528 0.4148 MAANTETAQSNIVAPAKKPLPAAKNVDSQSVLKRLQSELMALMMSGDSDISAFPEEDNIFIWKGTIKGSKETVFEGTEYKLSLSFPNDYPFKAPKVKFETTCFHPNVDVQGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNPQAAQLWGNQEEYRKMVEKLCKFQDA* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0255 175 Pfam Ubiquitin-conjugating enzyme 34 168 IPR000608 -
Lja3g0255 175 Gene3D Ubiquitin Conjugating Enzyme 23 174 IPR016135 -
Lja3g0255 175 SMART ubc_7 33 175 - -
Lja3g0255 175 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 103 118 IPR023313 -
Lja3g0255 175 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 16 172 - -
Lja3g0255 175 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 30 175 IPR000608 -
Lja3g0255 175 SUPERFAMILY UBC-like 28 170 IPR016135 -
Lja3g0255 175 CDD UBCc 33 170 IPR000608 -
Lja3g0255 175 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 20 16 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0255 Lja-Chr3 2570194 2571667 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0255 32 139 Miscellaneous Gene Families AT3G17000 32.743 2.44e-13 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0255 K06688 - gmx:100527864 296.204