Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0235 ATGATAAGCCTTTTTATGCCAACATTTCAAGTTTCTAAAGAAAAGGCAAAGAGTTTGGGAATTGAATTTATTCCCTTAGAAGTGAGCCTCAAGGAGACAGTGAAAAGCTTACAAGAAAAGAATGCAGGGAAGTTGGTGTGTGTGACTGGTGCTTCTGGCTATATTGCTTCATGGATTGTAAAGAGTCTTCTCCAACGTGGTTACACTGTTAGAGCCACTGTTCGTGACCCCAGTAATTCCAAGAAGGTTGAGCACTTGGTTAAACTTGATGGTGCAAAAGAAAGGTTGCATCTGTTTAAAGCAGATCTATTGGAAGAAGGTTCCTTTGACTCTGTTGTTGATGGCTGTGATGGTGTCTTTCATACTGCTTCACCTGTTCGTGGTGCTGTCAAAGATCCACAGGTTGAATTGATTGATCCAGCAGTGAAGGGAACTCTTAATGTTCTTAAATCATGCGCGAAATCACCGACTGTGAAACGAGTTGTCTTAACTTCTTCTGTTGCTGCAGTTATATTTAGTGGAAGGCCTTTAAGTCCAGAAGTAGTGGTTGATGAGACATGGTTTTCAGATCCAGATATCTGTAGGGAATTAAAGAGGTGGTACTCACTTTCAAAGACTTTGGCTGAGGATGCTGCCTGGAAATTTGTAAAAGAAAACAAAATTGACATGGTTGTTATTAACCCTTGCATGGTGGCAGGACCTCTCTTACCACCAGAGGTTAATTATAGTGTTGAGCCAATTTTAAACCTAATTAATGGTTTCCCATTTCCAAATTTTTCTATGGGATGGGTCAATGTGAAAGATGTTGCTAAAGCACATATTCAAGCATATGAGATTGCTTCAGCTAGTGGAAGATATTGTTTAATTGAGAGAGTGGTACACTACTCTGAAATTGCAAGGATTTTAGGTGATCTGTACCCAACATTACAAATTTCAAACAAGTGTGAGGATGATGGGCCGTACACACCAACATATCAATATTCTCAAGAAAAGGTTAAGAGCTTAGGAATTGAGTTCACTCCTTTGGAAATAAGTATCAAGGAAACCGTTGAAAGTTTTAGAGAAAAGAAGATTGTCAAATTTTGA 1086 0.3895 MISLFMPTFQVSKEKAKSLGIEFIPLEVSLKETVKSLQEKNAGKLVCVTGASGYIASWIVKSLLQRGYTVRATVRDPSNSKKVEHLVKLDGAKERLHLFKADLLEEGSFDSVVDGCDGVFHTASPVRGAVKDPQVELIDPAVKGTLNVLKSCAKSPTVKRVVLTSSVAAVIFSGRPLSPEVVVDETWFSDPDICRELKRWYSLSKTLAEDAAWKFVKENKIDMVVINPCMVAGPLLPPEVNYSVEPILNLINGFPFPNFSMGWVNVKDVAKAHIQAYEIASASGRYCLIERVVHYSEIARILGDLYPTLQISNKCEDDGPYTPTYQYSQEKVKSLGIEFTPLEISIKETVESFREKKIVKF* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0235 361 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 40 359 - -
Lja3g0235 361 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE 5 40 - -
Lja3g0235 361 CDD FR_SDR_e 46 336 - -
Lja3g0235 361 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 41 355 IPR036291 -
Lja3g0235 361 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE 40 359 - -
Lja3g0235 361 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 5 40 - -
Lja3g0235 361 Pfam NAD dependent epimerase/dehydratase family 46 278 IPR001509 -
Lja3g0235 361 Gene3D - 44 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0235 Lja-Chr3 2391059 2394786 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0235 5 40 Miscellaneous Gene Families AT5G19440 66.667 3.10e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0235 - - gmx:100799213 524.242