Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lja3g0233 | ATGAGCAACGGTGCAGGGAAGTTGGTTTGTGTTACTGGTGGTTCTGGCTATATTGCTTCATGGATTGTCAAGTTTCTTCTGGAACATGGTTATACTGTCAGAGCCACTGGATGTGATGGTGTCTTTCACACTGCTTCACCTGTTCGTTTTATTGTCATAGATCCACAGGCTGAATTGATTGATCCAGCGGTGAAGGGAACTCTTAATGTTCTTAAATCATGCGCAAAATCACCATCTGTGAAACGAGTTGTCTTAACTTCTTCTGTTGGTGCAGTTCAATATAATGAAAGGCCTAAAACTCCAGAAGTATTGATTGATGAGACATGGTTTTCAGATCCAGATTTCTGTAGGAAATCAAAGTTTTGGTACCAGCTTGCAAAGACTTTGGCTGAGGATGCTGCCTGGAAATTTGTAAGAGAAAACAAAGTTGACATGGTTGTTATCAACCCGACATTGGTGGCAGGACATCTCTTACAACCAGAGGTTAATTTCAGTGTTGAGGGAATTTTAAACCTAATTAATGGTGTTCCATTTCCAAATTTTTCTATTGGATGGGTAGATGTGAAAGATGTTGCCAAAGCACATATTCAAGCATATGAGATTGCTTCAGCTAGTGGAAGATATTGTTTGGTTGAGAGAGTGGTACACAACTCTGAAGTTGCTAGGATTTTACGTGATCTGTACCCAACATTACAAGTTTCAAACAAGTGTGAGGACGATGAACCATATATGCCAACAGACCAATTTTCTCAAGAAAAGGCTAAGAGCTTAGGAATTGAGTTTACTCCTTTAGAAATAAGCATCAAGGAGACTGTTGAAAGCTTTAGAGAAAAGAAGATTGTAAACTTTTAG | 852 | 0.3908 | MSNGAGKLVCVTGGSGYIASWIVKFLLEHGYTVRATGCDGVFHTASPVRFIVIDPQAELIDPAVKGTLNVLKSCAKSPSVKRVVLTSSVGAVQYNERPKTPEVLIDETWFSDPDFCRKSKFWYQLAKTLAEDAAWKFVRENKVDMVVINPTLVAGHLLQPEVNFSVEGILNLINGVPFPNFSIGWVDVKDVAKAHIQAYEIASASGRYCLVERVVHNSEVARILRDLYPTLQVSNKCEDDEPYMPTDQFSQEKAKSLGIEFTPLEISIKETVESFREKKIVNF* | 284 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lja3g0233 | 283 | PANTHER | NAD DEPENDENT EPIMERASE/DEHYDRATASE | 37 | 281 | - | - | |
| Lja3g0233 | 283 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 5 | 277 | IPR036291 | - | |
| Lja3g0233 | 283 | PANTHER | NAD DEPENDENT EPIMERASE/DEHYDRATASE | 3 | 36 | - | - | |
| Lja3g0233 | 283 | Gene3D | - | 1 | 36 | - | - | |
| Lja3g0233 | 283 | Gene3D | - | 37 | 283 | - | - | |
| Lja3g0233 | 283 | CDD | FR_SDR_e | 9 | 258 | - | - | |
| Lja3g0233 | 283 | PANTHER | CINNAMYL ALCOHOL DEHYDROGENASE | 37 | 281 | - | - | |
| Lja3g0233 | 283 | PANTHER | CINNAMYL ALCOHOL DEHYDROGENASE | 3 | 36 | - | - | |
| Lja3g0233 | 283 | Pfam | NAD dependent epimerase/dehydratase family | 37 | 200 | IPR001509 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lja3g0233 | Lja-Chr3 | 2375794 | 2384212 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lja3g0233 | 1 | 283 | Miscellaneous Gene Families | AT5G19440 | 57.362 | 2.56e-131 | 374 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lja3g0233 | - | - | gmx:100799213 | 440.269 |