Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0226 ATGACGACGTCGTTCGCAGCAGCATCACCGGCTCTCAGAGACCCCAACCTCCACATCCCAACCTTCCATGGCCTCAGATCTGCTCTCACTCGCAATGCCCTCCCATCCACGCGCTCCCTCTCGCTCATACGCGCCGTCTCCACGCCTGAAACTGTGACTGAGAAGCGTAGCAAAGTCGAAATAATCAAAGAGCAAAGCAATTTCATAAGATACCCTCTCAACGAGGATTTGCTAACAGATGCTCCCAATTTGAGCGACTCAGCTGTACAGTTAATCAAGTTTCATGGCAGCTACCAGCAGTACAACAGAGATGAGCGTGGCTCCAGAACCTACTCCTTCATGATACGCACTAAAAACCCTTGTGGGAAGGTTCCCAATAGGCTTTACTTGACCATGGATGATCTCGCCGATCAATTTGGAATCGGGACGCTTCGATTGACTACCAGGCAGACGTTTCAGCTACATGGGGTTGTCAAGCAGGATCTCAAAACTGTTATGGCTAGCATTATCAGGAACATGGGGTCCAGTCTCGGTGCTTGTGGTGACCTTAACAGGAATGTGCTTGCTCCTGCGGCTCCCCTTGTGAGAAATGATTACCTCTTTGCTCAGCAGACCGCGGAGAATATTGCCGCGCTACTGGCTCCGCAGTCTGGTTTTTACTATGATATTTGGGTGGATGGGGAGAGGATTATGTCAGCAGAACCGCCTGAAGTTGTTCAGGCGCGAAATGATAATTCTCATGGTACAAATTTCCCTGATTCGCCTGAGCCCATTTATGGAACTCAGTTCTTGCCAAGGAAATTCAAAGTTGCAGTTACTGTGCCAACTGATAACTCGGTGGATATCCTCACGAATGATATTGGGGTTGTTGTTGTTACTGATGATGATGGGGAGCCTCAAGGGTTCAACATATATGTTGGGGGAGGAATGGGAAGAACACATAGGAATGAAAGCACTTTTCCCCGGTTGGCTGAACCGCTGGGTTATGTACCGAAAGAGGATATTTTGTATGCAGTGAAAGCAATTGTGGTTACACAGCGAGAAAATGGGAGAAGAGATGACCGCAAGTATAGTAGAATGAAATATTTGATCAGCTCTTGGGGAATTGAAAAGTTCAGAACTGTAGTTGAGCAATACTATGGCAAGAAATTTGAACCTTTCCGCCGCTTGCCAGAATGGGAATTTAAAAGTTATCTTGGGTGGCATCAGCAGGGTGATGGCAGTTTATTTTATGGGCTTCATGTTGATAATGGTCGTATTGCTGGGAAAATGAAGAAGGCATTGAGGGAGGTTATTGAGAAATATAATTTGAACGTTCGACTCACTCCAAATCAGAACATAATACTGACTGACATTCGTGCTGTGTGGAAGCGTCCCATCACAACAATTCTCGCTCAAGCTGGTCTTTTGCAACCTAGTCTTGTAGATCCCCTCAACAGGACGGCAATGGCCTGCCCTGCTTTCCCATTATGTCCATTGGCTATTACCGAAGCTGAACGTGGGATACCAGACATTCTTAAACGGGTTCGTGGTGTTTTTGAAAAGGTTGGTTTGAAGTACAGCGAGTCTGTAGTTGTAAGGGTAACTGGCTGCCCTAATGGTTGTGCTAGACCATACATGGCTGAGCTTGGACTGGTTGGGGATGGCCCAAATAGCTATCAGATTTGGCTGGGAGGAACCCCGAATCAAACATCGATAGCTCGAAGTTTCATGGACAAGGTGAAGCTTCAAGACCTTGAAAAGGTTCTGGAGCCTTTGTTTTATTATTGGAAGCAAAAGCGTCAATCTAAAGAATCATTTGGTGTCTTCACAAACCGAATGGGATTTGAGAAGCTTAAAGAATATGTTGAGAAATGGGAGGGTCCAGTAGCAGCACCAACACGCCACAACCTTCAGCTTTTTGCTGACAGGGAAACATATGAAGCAATGGAGGAATCAGCAAAGCTTCAAAACAAGACTGCTCATCAGTTGGCTATGGAAGTTATCCGCAATTATGTTGCTGCCAACCAAAATGGAAAAGATGATTCATTTCATTGA 2037 0.4595 MTTSFAAASPALRDPNLHIPTFHGLRSALTRNALPSTRSLSLIRAVSTPETVTEKRSKVEIIKEQSNFIRYPLNEDLLTDAPNLSDSAVQLIKFHGSYQQYNRDERGSRTYSFMIRTKNPCGKVPNRLYLTMDDLADQFGIGTLRLTTRQTFQLHGVVKQDLKTVMASIIRNMGSSLGACGDLNRNVLAPAAPLVRNDYLFAQQTAENIAALLAPQSGFYYDIWVDGERIMSAEPPEVVQARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVTDDDGEPQGFNIYVGGGMGRTHRNESTFPRLAEPLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRTVVEQYYGKKFEPFRRLPEWEFKSYLGWHQQGDGSLFYGLHVDNGRIAGKMKKALREVIEKYNLNVRLTPNQNIILTDIRAVWKRPITTILAQAGLLQPSLVDPLNRTAMACPAFPLCPLAITEAERGIPDILKRVRGVFEKVGLKYSESVVVRVTGCPNGCARPYMAELGLVGDGPNSYQIWLGGTPNQTSIARSFMDKVKLQDLEKVLEPLFYYWKQKRQSKESFGVFTNRMGFEKLKEYVEKWEGPVAAPTRHNLQLFADRETYEAMEESAKLQNKTAHQLAMEVIRNYVAANQNGKDDSFH* 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0226 678 Pfam Nitrite/Sulfite reductase ferredoxin-like half domain 110 168 IPR005117 GO:0016491
Lja3g0226 678 Pfam Nitrite/Sulfite reductase ferredoxin-like half domain 402 453 IPR005117 GO:0016491
Lja3g0226 678 Pfam Nitrite and sulphite reductase 4Fe-4S domain 206 384 IPR006067 GO:0016491|GO:0020037|GO:0051536
Lja3g0226 678 SUPERFAMILY Nitrite and sulphite reductase 4Fe-4S domain-like 478 639 IPR045854 -
Lja3g0226 678 TIGRFAM sir: sulfite reductase, ferredoxin dependent 48 619 IPR011787 GO:0020037|GO:0050311|GO:0051539
Lja3g0226 678 PANTHER BNAA01G31570D PROTEIN 34 621 - -
Lja3g0226 678 SUPERFAMILY Nitrite/Sulfite reductase N-terminal domain-like 399 472 IPR036136 GO:0016491
Lja3g0226 678 Gene3D Sulfite Reductase Hemoprotein, domain 1 185 387 IPR045854 -
Lja3g0226 678 Pfam Nitrite and sulphite reductase 4Fe-4S domain 479 618 IPR006067 GO:0016491|GO:0020037|GO:0051536
Lja3g0226 678 SUPERFAMILY Nitrite and sulphite reductase 4Fe-4S domain-like 181 396 IPR045854 -
Lja3g0226 678 ProSitePatterns Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 529 545 IPR006066 GO:0016491|GO:0020037|GO:0051536
Lja3g0226 678 Gene3D Sulfite Reductase Hemoprotein;Domain 2 111 184 - -
Lja3g0226 678 Gene3D Sulfite Reductase Hemoprotein;Domain 2 388 472 - -
Lja3g0226 678 Gene3D Sulfite Reductase Hemoprotein, domain 1 476 624 IPR045854 -
Lja3g0226 678 PANTHER SULFITE REDUCTASE [NADPH] SUBUNIT BETA-RELATED 34 621 IPR045169 GO:0016491|GO:0020037|GO:0051536
Lja3g0226 678 SUPERFAMILY Nitrite/Sulfite reductase N-terminal domain-like 53 180 IPR036136 GO:0016491
Lja3g0226 678 PRINTS Sirohaem Fe-binding site signature 480 498 IPR006066 GO:0016491|GO:0020037|GO:0051536
Lja3g0226 678 PRINTS Sirohaem Fe-binding site signature 529 547 IPR006066 GO:0016491|GO:0020037|GO:0051536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0226 K00392 - gmx:547693 1192.18