Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0217 ATGGGTCAAGCTTTTCGGAAACTCTTCGATACCTTCTTCGGCAACACCGAGATGCGGGTTGTTATGCTTGGTCTTGATGCTGCTGGAAAAACAACTATACTGTACAAGCTTCACATTGGAGAAGTTTTATCTACTGTTCCTACTATTGGTTTCAATGTGGAGAAGGTTCAGTATAAGAATGTTATTTTCACGGTTTGGGATGTTGGAGGGCAAGAGAAACTTAGGGCACTTTGGAGGCACTATTTTAACAATACAGATGGTTTGATTTATGTTGTTGATAGTCTGGACCGTGAGAGGATTGGGAAAGCAAAGCAGGAATTTCAGACAATCATAAACGACCCATTTATGCTCAACAGTATTATCTTGGTCTTCGCCAACAAACAAGATCTGAGAGGAGCGATGACGACAAAGGAAGTATGTGATGGACTGGGTCTGTTTGATCTCAAGAATAGACAGTGGCACATACAAGCCACTTGTGCGCTTAAGGGGGATGGCCTTTATGAAGGCTTGGACTGGTTGTCCTCAACTCTCAAGGAGAGGAATGCTGCTGGATACTCGTCAATAGGACTAGGAACTGCATCCTTCTAA 588 0.432 MGQAFRKLFDTFFGNTEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRALWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQTIINDPFMLNSIILVFANKQDLRGAMTTKEVCDGLGLFDLKNRQWHIQATCALKGDGLYEGLDWLSSTLKERNAAGYSSIGLGTASF* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0217 195 PANTHER ADP RIBOSYLATION FACTOR-RELATED 1 190 IPR024156 GO:0005525
Lja3g0217 195 TIGRFAM small_GTP: small GTP-binding protein domain 16 138 IPR005225 GO:0005525
Lja3g0217 195 CDD Arf1_5_like 18 176 IPR045872 GO:0003924
Lja3g0217 195 SMART arf_sub_2 1 181 - -
Lja3g0217 195 SMART sar_sub_1 9 177 IPR006689 GO:0003924|GO:0005525
Lja3g0217 195 PRINTS GTP-binding SAR1 protein signature 19 42 IPR006689 GO:0003924|GO:0005525
Lja3g0217 195 PRINTS GTP-binding SAR1 protein signature 47 71 IPR006689 GO:0003924|GO:0005525
Lja3g0217 195 PRINTS GTP-binding SAR1 protein signature 74 99 IPR006689 GO:0003924|GO:0005525
Lja3g0217 195 PRINTS GTP-binding SAR1 protein signature 119 140 IPR006689 GO:0003924|GO:0005525
Lja3g0217 195 ProSiteProfiles small GTPase Arf family profile. 11 177 - -
Lja3g0217 195 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 181 IPR027417 -
Lja3g0217 195 SMART rab_sub_5 18 180 - -
Lja3g0217 195 Pfam ADP-ribosylation factor family 6 176 IPR006689 GO:0003924|GO:0005525
Lja3g0217 195 Gene3D - 3 187 IPR027417 -
Lja3g0217 195 PANTHER ADP-RIBOSYLATION FACTOR 1-LIKE 2 1 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0217 Lja-Chr3 2236761 2240434 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0217 K07937 - gmx:100499903 377.481