LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja3g0215	ATGGCGGAAGATCGGAAAACACCGAAGCTTCCCGTCGAAGGCAAGCGCAACATCCTCATCACCAGCGCCTTGCCTTACGTCAACAACGTCCCTCATCTCGGCAACATCATTGGATGTGTGTTGAGTGCTGATGTGTTTGCTCGCTACTGTCGCCTTCGGGGTTACAATGCTATTTACATCTGTGGCACTGATGAGTATGGAACTGCCACTGAGACTAAAGCCATGGAAGAGAATTGCTCCCCCAAAGAGATTTGTGACAAGTATCATGCTATTCACAGTGAGGTCTACAATTGGTTCAATATAAGTTTCGATGAATTTGGGCGGACCTCATCCCCTCAGCAAACTGAAGTTTGCCAAGCGATTTTTAAGAAAGTATTTGACAACAAATGGCTCTCCGAGAACACCATGCAGCAGCTTTACTGTGATACATGCCAAAGGTTCTTGGCTGATCGGCTCGTGGAGGGTAACTGTCCAACTCCGGGGTGTGGGTATGATTCTGCTCGAGGAGACCAATGTGAGAAGTGTGGAAAGCTTCTGAATCCAACAGAATTGAAGGATCCTAGGTGCAAGGTTTGTCGAAATTCTCCCCGTATTCGTGATACGGACCACTTGTTTCTTGAACTCCCTCTGTTGAAAGATAAATTGGAAAAATACATCAAAGAGATGTCTGTAGCCGGATCATGGAGTCAGAATGCTATTCAAACAACAAATTCATGGCTTAGAGAGGGATTAAAGCCACGTTGTATTACCAGGGATCTGAAATGGGGGGTTCCTGTTCCACATGAAAAATACAGTGACAAGGTTTTCTATGTTTGGTTTGATGCACCTATCGGATATGTCTCAATCACCGCATGCTACACAAATGATTGGGAGAAATGGTGGAAAAACCCGGAGAATGTGGAGTTGTATCAGTTTATGGGCAAGGACAATGTACCATTCCACACTGTGATGTTTCCATCTACACTACTTGGAACTGGTGAGAATTGGACTTTAATGAAGACCATCAGTGTTACCGAATACTTGAATTATGAAGCAGGGAAGTTTTCTAAAAGCAAAGGCATTGGGGTATTTGGTAATGATGCAAAAGATACTAATATCCCAGTTGAAGTATGGAGATATTACTTGCTCACAAATAGGCCTGAGGTATCAGATACATTATTCACGTGGACTGACTTGCAAGCGAAATTAAATGGGGAGTTGCTGAGCAATTTGGGCAACTTTGTCAATCGAGTTTTGAGTTTTATTGCCAAACCTGCAGGTCAAGGATATGATTCCACTATTCCTGCTGTTCCTAATGATGTAAGTGGTGACTCCCACAATCCGACAAAAAAAATGGCTGATAAAGTTATTGCATATGTGGAGCAATACATAGAAGCAATGGAGAAGGTTAAGCTAAAGCAAGGATTGAAAATTGCAATGAGCATATCTGGCGAGGGGAATGCATATCTGCAGGAAACTGAATTCTGGCGCCTTTACAAGGGAAACCCTTCTCTCTGCTCCCTTGTTATGAAAACTGCAGCTGGGCTTGTATATCTTCTTGCTTGTTTATTAGAACCTTTTATACCATCATTCACTGTTGAGGTATTTAAGCAGTTAAATTTGTCCACGGATATGCATCTTTCACTTTGTGACGATAAAGGAGATATTGATAGGGTAAGAAGACCCTGGGATCTCATAAGTGTTGGTCATAAAATTGGAACACCCAAGCCATTGTTCAGGGAGCTGAAAGATGAAGAAGTGGAGCTCTACAGAAATAAGTTTGCAGGAAGTCAAGCTGATAGAATTATCCGTGCAGAAGCTGAAAATGTTGCTGAGCAACTAAGGAACACAAATGTTTCAGATGGCAATGGAAAGAAAAAATCATCAGCAAAATCATCAAATGTAACAAAAAACAAGGCTGCTGCTGAGCAAGAAATTACCATCTCAAGACTTGATATCCGGGTTGGTCTCATAAAGAAAGCTGAAAAACATCCTGATGCAGATTCTCTATATGTTGAAGAGATCGATGTTGGTGAAGAACAGACCAGAACTGTTGTCAGTGGACTGGTCAAGTATATACCAATTGATGAAATGCAGAACCGAAAGGTTTGTGTTCTTTGCAACCTAAAGCCAGCAGCCATGAGGGGCATTAAATCTCATGCTATGGTTCTTGCTGCTTCCAACGATGACCACACCAAGGTTGAGTTGGTTGAATCTCCTAGTTCTGCTGTTGTTGGAGAAAGAGTCACATTCCCTGGGTTTGAAGGTAATCCTGATGAACTCTTGAACCCAAAGAAGAAAGTTTGGGAGACACTGCAGGTGGATCTGCACAGTAATGAGGAACTAGTGGCCTGCTACAAAAATATTCCACTTACCACATCGGCTGGTGTTTGCAAGGTTTCATCCATACGCAATGGATCAATTAGGTAG	2409	0.4251	MAEDRKTPKLPVEGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKAMEENCSPKEICDKYHAIHSEVYNWFNISFDEFGRTSSPQQTEVCQAIFKKVFDNKWLSENTMQQLYCDTCQRFLADRLVEGNCPTPGCGYDSARGDQCEKCGKLLNPTELKDPRCKVCRNSPRIRDTDHLFLELPLLKDKLEKYIKEMSVAGSWSQNAIQTTNSWLREGLKPRCITRDLKWGVPVPHEKYSDKVFYVWFDAPIGYVSITACYTNDWEKWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYEAGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWTDLQAKLNGELLSNLGNFVNRVLSFIAKPAGQGYDSTIPAVPNDVSGDSHNPTKKMADKVIAYVEQYIEAMEKVKLKQGLKIAMSISGEGNAYLQETEFWRLYKGNPSLCSLVMKTAAGLVYLLACLLEPFIPSFTVEVFKQLNLSTDMHLSLCDDKGDIDRVRRPWDLISVGHKIGTPKPLFRELKDEEVELYRNKFAGSQADRIIRAEAENVAEQLRNTNVSDGNGKKKSSAKSSNVTKNKAAAEQEITISRLDIRVGLIKKAEKHPDADSLYVEEIDVGEEQTRTVVSGLVKYIPIDEMQNRKVCVLCNLKPAAMRGIKSHAMVLAASNDDHTKVELVESPSSAVVGERVTFPGFEGNPDELLNPKKKVWETLQVDLHSNEELVACYKNIPLTTSAGVCKVSSIRNGSIR*	803

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lja3g0215	802	Pfam	Anticodon binding domain of methionyl tRNA ligase	437	591	IPR041872	-
Lja3g0215	802	PANTHER	METHIONINE--TRNA LIGASE CYTOPLASMIC	6	802	-	-
Lja3g0215	802	TIGRFAM	metG: methionine--tRNA ligase	18	538	IPR014758	GO:0000166\|GO:0004825\|GO:0005524\|GO:0006431
Lja3g0215	802	SUPERFAMILY	Methionyl-tRNA synthetase (MetRS), Zn-domain	153	189	IPR029038	-
Lja3g0215	802	CDD	tRNA_bind_EMAP-II_like	639	743	-	-
Lja3g0215	802	Hamap	Methionine--tRNA ligase [metG].	16	586	IPR023458	GO:0004825
Lja3g0215	802	ProSiteProfiles	tRNA-binding domain profile.	640	743	IPR002547	GO:0000049
Lja3g0215	802	SUPERFAMILY	Nucleotidylyl transferase	15	397	-	-
Lja3g0215	802	SUPERFAMILY	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	404	587	IPR009080	GO:0000166\|GO:0004812\|GO:0005524\|GO:0006418
Lja3g0215	802	CDD	MetRS_core	17	387	IPR033911	GO:0004825\|GO:0006431
Lja3g0215	802	Gene3D	HUPs	17	400	IPR014729	-
Lja3g0215	802	Gene3D	-	153	189	IPR029038	-
Lja3g0215	802	PANTHER	METHIONINE--TRNA LIGASE	6	802	IPR023458	GO:0004825
Lja3g0215	802	PRINTS	Methionyl-tRNA synthetase signature	399	410	IPR033911	GO:0004825\|GO:0006431
Lja3g0215	802	PRINTS	Methionyl-tRNA synthetase signature	101	112	IPR033911	GO:0004825\|GO:0006431
Lja3g0215	802	PRINTS	Methionyl-tRNA synthetase signature	53	67	IPR033911	GO:0004825\|GO:0006431
Lja3g0215	802	PRINTS	Methionyl-tRNA synthetase signature	20	33	IPR033911	GO:0004825\|GO:0006431
Lja3g0215	802	PRINTS	Methionyl-tRNA synthetase signature	269	280	IPR033911	GO:0004825\|GO:0006431
Lja3g0215	802	PRINTS	Methionyl-tRNA synthetase signature	304	319	IPR033911	GO:0004825\|GO:0006431
Lja3g0215	802	Pfam	tRNA synthetases class I (M)	18	412	IPR015413	GO:0000166\|GO:0004812\|GO:0005524\|GO:0006418
Lja3g0215	802	CDD	Anticodon_Ia_Met	396	532	IPR041872	-
Lja3g0215	802	Gene3D	-	639	802	IPR012340	-
Lja3g0215	802	Pfam	Putative tRNA binding domain	646	740	IPR002547	GO:0000049
Lja3g0215	802	SUPERFAMILY	Nucleic acid-binding proteins	641	801	IPR012340	-
Lja3g0215	802	MobiDBLite	consensus disorder prediction	609	634	-	-
Lja3g0215	802	Gene3D	-	402	574	-	-
Lja3g0215	802	ProSitePatterns	Aminoacyl-transfer RNA synthetases class-I signature.	25	36	IPR001412	GO:0000166\|GO:0004812\|GO:0005524\|GO:0006418

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja3g0215	Lja-Chr3	2200155	2220336	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja3g0215	K01874		-	gmx:100809861	1466.44