Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0172 ATGGGAGTTGTTTGCTTTGAAATCAATGGAAATTCTGCTTCTGCTTTACATTATGTTTCCAATTCGTTCTCTTCATATGCGGTTCCCATTTCTTCGAGACCCTTCTTCGGTAATGCTTTGAGTGTGAGGGTTGGGAGGAAGTTTCAGGTCTCCCATACACGAAAACTCAATATTGGGCCAGTCATGGTTTCCCTCAATGGTGGCTCTGGCTCTAATGCTGGGTCGGTCAGTGAAGTTCTTCGTCTCAAGGATATGGAATTTAAGCCATCATTTGACGAGTATTTGAAGGCTATGGAATCTGCCAAAACTGGAAGGGGCAAGAAGCATGCTGCTACTCAAACACAGAAGAAGATGAAAATGGGGGTTGATGATGGAAATAAAATTTTTAAAAGGGTCGGAGAGAAAATTGATAAAAAAGATGATTTTGAAGATGTGGGGTTAAGAGTTGATGAAGCTGTTATGGACAAAGAAGGCTCATCCACAAGTCATGGAAAGTTAAGAGGAGGGTTTAAGAAGGAATTTGATGGGAAAGAAAGTAATCTTGATGTCAAGGCGAAGCAGAAGCATGGGGCAAACATGAGGCAAGGTGAGTGGTTGAAACGCCAGAGTCATAGCTTAGGATCAGAATCTGATGACCGCAGTGTGGTTAAGCGTCGAGGCGAAAATGGAAGTGGAAGGATAAGCAATAGCATAATTAGGTCTAATTCGACTGGTAGCCGTAACAGTCAAGGCAGAAATGGAAGTGGAGGGATGAGCAATAATATGATTAGGTCGAGTTCGAATGGTAGCCGTAACAGTCAGGGAAAATATGGAAGTGGAAGGATGAGCAATAACATGATTAGGTCTAATTCGAATGGTAGTCGTGGGAGTGTCATTGACAGGGGTGTCCCTTATAATATGTACTCTTCAAAGGTATCAAGAGATAGTGGACAAAGAGGAGGGATGAGCAAAAACATAATTAGGTCTAGTTCGAATGGTAGCCGTGGGAGTGTCATTGACAGGGGTGTCACTCATGATTTATACTCTTCAAAGGTATCAAGAGATAGTAGACAAAGAGGAGGGATGGGCAATAACATCATTACGTCTAGTTCGAATGGTAGCCGTGGGAGTACCATTGACAGGGGTGTCACTCATGATTTATACTTTTCAAAGGTATCAAGAGATAGTAGACAAAGAGGCCACAACATGGGTGGAGATAAAATAGTAGCAAGCAGAAAAGTTATGGATAGAGGGCTTGAAAGAAAACATATTGAATCTGAGAGTTTGGTAAATAGAAATGGGCGGGTGAGCAGTAAGCGTTTCCTCGATAGGGGTTATGATTCTGACAATTTGGAAGTGGAACGAGCTGCATTCAAGAATCTTGAGGACCCAAAAAATGTTATCAGCAAGAAACAATTTTCACATAAGGAAATGGAGGAGAAAATTCAGACGCTAGCCAAATCGTTGAATGGTGCAGATATCGGTTTACCTGAATGGATGTTTTCCCAGATGATGAGAAGTGCAAAACTCAAATTTAATGACTATTCGATAACCAGGGTTATCATACTCTTGGGAAATCTAGGAAACTGGCGTCGAGTGGTACAGGTCATCGAATGGCTTCAAAGGCGTGAGCGTTTCAAGTCCTATAAGCTAAGGCATATATATACTGCTGCTCTTGGTGCACTTGGGAAGTCGAAGAGACCCGTAGAGGCACTGAATGTATTTCATGCTATGCTGCAACAAATGTCCTCATATCCTGACTTAGTAGCTTATCATAGTATTGCTGTTACTCTAGGGCAAGCAGGGCACATGAAGGAACTCTTTGATGTGATTGATATTATGCGATCACCACCAAAGAAGAAGATCAAAACAGAGATATTTGAGAACTGGGACCCAAGACTGGAACCAGATATTGTAGTCTATAATGCTGTCCTTAATGCCTGTGTTAAGCGGAAGCAGTGGGAAGGGGCCTTTTGGGTTCTACAGCAGTTAAAGAAACAGAACCTACAACCTTGTCCTGCAACTTATGGCCTAGTTATGGAGGTGATGTTTTCATGTGGCAAGTACAACTTGGTTCATGAATTTTTCAGAAAACTTCAGAAGTCTTCTATTCCCAATTCATTAACTTATAGAGTTCTCGTGAATACGTTTTGGAAAGAGGGGAAAACTGATGAGGCCATATCAGCTGTCCAAGAAATGGAAACACGTGGAATTGTAGGTTCTGCTGCCATTTATTATGATCTAGCTCGATGCCTCTGTGCAGCTGGAAGAGGTCGTGAGGCACTGATGCAGATAGACAAGATATGTAAGGTTGCAAATAAACCACTAGTAGTAACCTACACTGGTTTGATGCAAGCAAGTCTAGACTCTGGAAACATTCAAGATGGGGCTTATATTTTTGAGAAAATGAAGGAAATTTGTGCTCCGAATCTGGTTACTTATAACATAGTGCTGAAAGCTTACCTGGAACATGGGATGTTTCAAGAAGCTAAAGAGTTGTTGGAGCAAATGTTGGAAAACACAAATCATCTGAGGGAAAAAACTGACAATAAGATGCGGGTGATACCAGATATATACACATTCAATACCATGTTAGATGCATGTGTTGCAGAGAGGAGATGGGATTATTTTGAGTATGTCTATCAAAGGATGTTGTACCACGGTTACCACTTCAATCCAAAACGACATCTTCGAATGGTACTGGAGGCTTCAAGAGCTGGAAAGGAAGGGCCATTGGTGATAACATGGAAGCACTTGGCCGCGACAGATCGACTTCCGCCAGTTTCTCTGGTCAAGGAGAGGTTCTGTGTGGAGCTTGAGAAACATGACCATGTTGCTGCTCTCACATGTATCATCAACTATCCCCCAAAAGATTTGGAGCCATTCTCCAAGTCTTCATGGTTGAGTCTGTTCAAAGAAAATTCTCAGAGGTATCAGAAGGACACAATTGTTAGACTAATAAATGGGGCTAGCAATGTCGTTTCCAATAGTAGCTTGCCAAATCCAATACTTGTGTGTTTAATGCAATCATGCAAAGAATTTTTTTTCGCCACTGATGTTAGTGGAGCTGACATGGATTCAGTGAAAAATGTATTTGCAGTAGATAGTAAACTAGCGGTAGCCAAAGATGATCCAAAACTTTGTAATATAAACTCAACCAAAATCCAATGA 3150 0.4152 MGVVCFEINGNSASALHYVSNSFSSYAVPISSRPFFGNALSVRVGRKFQVSHTRKLNIGPVMVSLNGGSGSNAGSVSEVLRLKDMEFKPSFDEYLKAMESAKTGRGKKHAATQTQKKMKMGVDDGNKIFKRVGEKIDKKDDFEDVGLRVDEAVMDKEGSSTSHGKLRGGFKKEFDGKESNLDVKAKQKHGANMRQGEWLKRQSHSLGSESDDRSVVKRRGENGSGRISNSIIRSNSTGSRNSQGRNGSGGMSNNMIRSSSNGSRNSQGKYGSGRMSNNMIRSNSNGSRGSVIDRGVPYNMYSSKVSRDSGQRGGMSKNIIRSSSNGSRGSVIDRGVTHDLYSSKVSRDSRQRGGMGNNIITSSSNGSRGSTIDRGVTHDLYFSKVSRDSRQRGHNMGGDKIVASRKVMDRGLERKHIESESLVNRNGRVSSKRFLDRGYDSDNLEVERAAFKNLEDPKNVISKKQFSHKEMEEKIQTLAKSLNGADIGLPEWMFSQMMRSAKLKFNDYSITRVIILLGNLGNWRRVVQVIEWLQRRERFKSYKLRHIYTAALGALGKSKRPVEALNVFHAMLQQMSSYPDLVAYHSIAVTLGQAGHMKELFDVIDIMRSPPKKKIKTEIFENWDPRLEPDIVVYNAVLNACVKRKQWEGAFWVLQQLKKQNLQPCPATYGLVMEVMFSCGKYNLVHEFFRKLQKSSIPNSLTYRVLVNTFWKEGKTDEAISAVQEMETRGIVGSAAIYYDLARCLCAAGRGREALMQIDKICKVANKPLVVTYTGLMQASLDSGNIQDGAYIFEKMKEICAPNLVTYNIVLKAYLEHGMFQEAKELLEQMLENTNHLREKTDNKMRVIPDIYTFNTMLDACVAERRWDYFEYVYQRMLYHGYHFNPKRHLRMVLEASRAGKEGPLVITWKHLAATDRLPPVSLVKERFCVELEKHDHVAALTCIINYPPKDLEPFSKSSWLSLFKENSQRYQKDTIVRLINGASNVVSNSSLPNPILVCLMQSCKEFFFATDVSGADMDSVKNVFAVDSKLAVAKDDPKLCNINSTKIQ* 1050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0172 1049 SUPERFAMILY TPR-like 636 832 IPR011990 GO:0005515
Lja3g0172 1049 MobiDBLite consensus disorder prediction 302 331 - -
Lja3g0172 1049 PANTHER OS01G0674700 PROTEIN 9 1013 IPR044645 GO:0009658
Lja3g0172 1049 PANTHER OS01G0674700 PROTEIN 9 1013 - -
Lja3g0172 1049 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 850 884 IPR002885 -
Lja3g0172 1049 MobiDBLite consensus disorder prediction 156 372 - -
Lja3g0172 1049 MobiDBLite consensus disorder prediction 156 195 - -
Lja3g0172 1049 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 630 664 IPR002885 -
Lja3g0172 1049 Pfam Pentatricopeptide repeat domain 768 814 IPR002885 -
Lja3g0172 1049 Gene3D Tetratricopeptide repeat domain 761 910 IPR011990 GO:0005515
Lja3g0172 1049 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 699 733 IPR002885 -
Lja3g0172 1049 Pfam PPR repeat 547 573 IPR002885 -
Lja3g0172 1049 Pfam PPR repeat 852 881 IPR002885 -
Lja3g0172 1049 Pfam PPR repeat 702 731 IPR002885 -
Lja3g0172 1049 MobiDBLite consensus disorder prediction 347 372 - -
Lja3g0172 1049 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 803 833 IPR002885 -
Lja3g0172 1049 MobiDBLite consensus disorder prediction 204 220 - -
Lja3g0172 1049 Gene3D Tetratricopeptide repeat domain 696 760 IPR011990 GO:0005515
Lja3g0172 1049 Gene3D Tetratricopeptide repeat domain 536 695 IPR011990 GO:0005515
Lja3g0172 1049 Coils Coil 820 844 - -
Lja3g0172 1049 MobiDBLite consensus disorder prediction 223 290 - -
Lja3g0172 1049 Pfam PPR repeat family 629 673 IPR002885 -
Lja3g0172 1049 TIGRFAM PPR: pentatricopeptide repeat domain 805 833 IPR002885 -
Lja3g0172 1049 TIGRFAM PPR: pentatricopeptide repeat domain 632 664 IPR002885 -
Lja3g0172 1049 TIGRFAM PPR: pentatricopeptide repeat domain 852 878 IPR002885 -
Lja3g0172 1049 TIGRFAM PPR: pentatricopeptide repeat domain 702 733 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0172 Lja-Chr3 1742229 1750181 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0172 629 859 Glycosyltransferase AT1G05670 23.605 9.50e-17 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0172 - - lja:Lj3g3v3639830.1 1947.94