Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0161 ATGGCTACTGCTGCAGTTATTGGACTCAGTGGAGGGAAGAGGCTATTGAGTTCATCTTACTATTACTCTGATATTATAGAAAAGCTTTCTTGTAGCAGTGACTTTGGGTCCACACACTATCAGATTGTTCCTGCAAAATCGGTAACGGTTGCCAAGAAGTCATCCGACTACACACAAGCTTTTCCGGCATCTGATCGGCCGAATCAGTCTATCAAGGCTCTTAAGGAACATGTTGATGGTGTCCCTGCTGCTGCAGAGACATGGTTTCAAGAATGCGATTCTAATGACTTAGAGGTGGAAAGCTCTGACTTGGGTTACTCTGTGGAGGCTCTTCTTTTGCTGCAGAAGTCAATGCTTGAAAAGCAGTGGAGCCTTTCATGTGAGAGAGAAGTTCTTACGGAGCATCCGAGGCAAGAGAAAAGCAGTAAGAAAGTGGCAGTAACTTGTTCCGGGGTGTCTGCGAGGCAAAGAAGAATAAATACCAAGAGGAAGATCCCTGGTAAAACTGGCTCTGCGATGCAAGCTTGTGATGCTATGCAGATGAGGTCCTTGATCAGTCCTGAACTGCTTCAAAACCGTTCGAAGGGCTATGTGAAAGGTGTAGTGAGTGAGCAATTGCTCTCTCATGCTGAAGTTGTAAAGCTATCGGAGAAAATTAAAGTTGGCCTTTCCTTAGATGAGCATAAGTCCAGACTGAAGGAAAAATTAGGATGTGAACCCTCAGATGATCAAATTGCAGCTTCATTGAAGATTTCTCGATCTGAACTACGAGCAAAAACGATAGAGTGTACTTTGGCAAGAGAAAGGCTGGCTATGAGCAATGTTCGATTAGTTATGTCTATTGCTCAAAGATATGATAATATGGGGGCTGAAATGGCTGACCTTGTTCAGGGTGGCTTGATTGGACTACTTCGTGGGATTGAGAAATTTGATTCTTCAAAAGGGTTTAAGATTTCAACTTATGTTTATTGGTGGATACGTCAGGGGGTTTCAAGAGCTCTAGTTGAGAATTCGAGAACATTAAGATTGCCTACTCATTTGCATGAGAGGTTATCTTTGATCCGCACTGCAAAGTTTAGACTGGAAGAGAGAGGCATTACTCCAACTATTGATAGAATTGCAAAAAGCCTTAACATGTCCCAAAAGAAAGTCAGAAATGCTACAGAGGCTATCAGCAAAGTTTTCTCGCTTGATAGGGAAGCATTCCCCTCTCTGAATGGTCTTCCAGGAGATACTCATCATTGTTACATTGCAGATAATCGACTGGAGAACATCCCATGGCATGGAGTAGATGAGTGGACACTGAAGGATGAAGTGAACAAACTCATCAATGTGACCCTTGTGGAACGAGAGAGAGAAATTATTCGTCTTTATTATGGATTAGATAAAGAATGTCTTACGTGGGAAGACATTAGTAAACGGATAGGATTGTCTAGAGAAAGAGTAAGGCAAGTTGGGCTTGTTGCATTGGAGAAACTAAAACATGCCGCAAGGAAGAGAGAGATGGAGGCCATGCTATTGAAACATTGA 1530 0.4261 MATAAVIGLSGGKRLLSSSYYYSDIIEKLSCSSDFGSTHYQIVPAKSVTVAKKSSDYTQAFPASDRPNQSIKALKEHVDGVPAAAETWFQECDSNDLEVESSDLGYSVEALLLLQKSMLEKQWSLSCEREVLTEHPRQEKSSKKVAVTCSGVSARQRRINTKRKIPGKTGSAMQACDAMQMRSLISPELLQNRSKGYVKGVVSEQLLSHAEVVKLSEKIKVGLSLDEHKSRLKEKLGCEPSDDQIAASLKISRSELRAKTIECTLARERLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRTAKFRLEERGITPTIDRIAKSLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGDTHHCYIADNRLENIPWHGVDEWTLKDEVNKLINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKREMEAMLLKH* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0161 509 CDD Sigma70_r4 436 494 - -
Lja3g0161 509 ProSitePatterns Sigma-70 factors family signature 1. 294 307 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lja3g0161 509 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 1 509 - -
Lja3g0161 509 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 266 496 IPR014284 GO:0003700|GO:0006352|GO:0006355
Lja3g0161 509 Gene3D - 341 391 IPR036388 -
Lja3g0161 509 Pfam Sigma-70 region 2 272 339 IPR007627 GO:0003700|GO:0006352|GO:0006355
Lja3g0161 509 Gene3D RNA Polymerase Primary Sigma Factor 52 340 - -
Lja3g0161 509 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 195 340 IPR013325 GO:0003700|GO:0006352|GO:0006355
Lja3g0161 509 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 426 499 IPR013324 -
Lja3g0161 509 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 342 398 IPR013324 -
Lja3g0161 509 Pfam Sigma-70 region 3 349 418 IPR007624 GO:0003700|GO:0006352|GO:0006355
Lja3g0161 509 Pfam Sigma-70, region 4 446 495 IPR007630 GO:0003700|GO:0006352|GO:0006355
Lja3g0161 509 PANTHER RNA POLYMERASE SIGMA FACTOR SIGA 1 509 - -
Lja3g0161 509 Gene3D - 425 503 IPR036388 -
Lja3g0161 509 PRINTS Major sigma-70 factor signature 294 307 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lja3g0161 509 PRINTS Major sigma-70 factor signature 318 326 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lja3g0161 509 PRINTS Major sigma-70 factor signature 447 459 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lja3g0161 509 PRINTS Major sigma-70 factor signature 467 482 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lja3g0161 509 PRINTS Major sigma-70 factor signature 482 493 IPR000943 GO:0003700|GO:0006352|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0161 Lja-Chr3 1663451 1668749 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0161 K03086 - gmx:100794548 822.002