Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0159 ATGGCTTCCTCTCTCGCCGTGAAGCGCCTCCTCTCCTCCTCCGGCCACCTCTCCAGGTCTCTCTTCCGCCCCGCTGCTACTGCTTCTGCTTCCCGCTCTTTCAACACCAACGCCATGCGCCGCTACGACGAGGCTTCCGATGAAAGCGACGTCGACGTCGACCGCCGCTCTGACCGTCGCGCTGCACGCCGCGATGATTTCTTCTCAGATGTGTATGATCCATTTTCTCCAACTAGGAGCTTGTTCCAGGTTCTGAACACGGTGGATCAGCTCATGAACAGCCCCTTCATCACTCCTCCAACCAGGAGTCTGAGCCAGGTTTTGAACACGGTGGATCAGCTCAAGAACAACCCTCGTGGAGCTCGAAACGGCTGGGATGCGCGAGAGACAGAGGATGCTCTGCTTCTGCGTGTGAACATGCCTGGGCTGGGAAAAGAGGATGTGAAGATTGCTGTGGAGCAGAACACGCTGACCATCAGGGGTGAAGGTCCAAAGGAAAGTGAGGAGGAGGTTGGTGGTGGTCTTCGCTACACCAGCAGGATTGACTTGCCGGACAAGCTTTACAAGATTGATCAGATCAAAGCTGAGATGAAGAATGGTGTGCTCAAGGTCACTGTGCCTAAGATGAAGGAAGAGGAGAGGAGTGATGTGTTCAATGTCACGGTTGATTAG 672 0.5476 MASSLAVKRLLSSSGHLSRSLFRPAATASASRSFNTNAMRRYDEASDESDVDVDRRSDRRAARRDDFFSDVYDPFSPTRSLFQVLNTVDQLMNSPFITPPTRSLSQVLNTVDQLKNNPRGARNGWDARETEDALLLRVNMPGLGKEDVKIAVEQNTLTIRGEGPKESEEEVGGGLRYTSRIDLPDKLYKIDQIKAEMKNGVLKVTVPKMKEEERSDVFNVTVD* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0159 223 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 116 223 IPR002068 -
Lja3g0159 223 PANTHER 23.5 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 1 97 IPR044656 -
Lja3g0159 223 PANTHER 23.5 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 100 221 IPR044656 -
Lja3g0159 223 SUPERFAMILY HSP20-like chaperones 116 213 IPR008978 -
Lja3g0159 223 PANTHER 23.6 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 100 221 - -
Lja3g0159 223 PANTHER 23.6 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 1 97 - -
Lja3g0159 223 Gene3D - 56 222 IPR008978 -
Lja3g0159 223 CDD ACD_sHsps-like 126 208 - -
Lja3g0159 223 Pfam Hsp20/alpha crystallin family 127 220 IPR002068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0159 Lja-Chr3 1632273 1633654 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0159 K13993 - gmx:547852 236.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0159 3 1632273 1633654 Lja3g0159 3 1632273 1633654 ECH