Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0145 ATGAATCCAATGAATACCCTCGTTTCAAAATCCAAAATTTTCTCTCCTCCTTCAAGCTATACCACCAGTGGCAGTATCAGCAGCAGCGACAGCGATGAGAGCCCCATCTGCTCTCAACGAATGTCGCTGCTGTCTCTGCCACTGCCATGCAATGCCTGCACTTGCCACCGACAATTGGCCATTCTCTCAGGCCATGTTGGCTCTGTCTCTTGCCTTGCCCTGTGTGGCGAGTTCATTCTCAGCGCTTCACAGGGCAAGGACATCATAGTGTGGCAGCAACCAGATTTGAGGGTGTTTGCCAAATTTGGTCATGGAGATGGCTCCGTCAAGGCACTTGTAACGGTCGGAAACAAGGTTTTCACGGCTCATCAAGATAGCAGGATCAGGGTTTGGAAGGTGTCAAGGAGCTCAGAGAATGTGTTCAAGCTTGTTGACACATTACCCACCACAAAGGACTATTTGGGGAAGTTCATGAAACAGAGCAACTATGTCCAAACCCGGAGGCACCACAAGCGTTTGTGGATTGAGCATGCTGATAGTATCTCTTGTTTAACGGTTTGTAACGGTTTGATTTATTCAGGGTCATGGGACAAGACCCTTAAAGTGTGGAACCTCTCAGATTTGAAGTGTTTGGAGTCAATTAAAGCTCATGATGATGCAATTAATGGGTTGGTAGCAAGTAAAGGGATTGTGTATTCTGCTTCTGCTGATGGGAAGATTAAAGCTTGGGGGAGGAAGGAAGAGAAGAAGGGATTGCATTGTTTGAAAGGGGTTCTGGAGGGTCATAAAGATGTTTCCTTCAACTCTGTGATTGTTTCTGATGATGGGAAATGGGTCTATGGAGGAGGTTCTGATGGTTTTGTTATAGGTTGGGAAGGGTGTGGGAATTTTGAGAATTGGAAGATGGTTTCTGAGACTAAGGCACATGAGATGGCTGTGTTGTGTATGTGCCTAATGGGGGATTTTTTGTGCAGTGGCTCTGCTGATAAAAGCATCGGTATTTGGAAGAGAGAGGCTTTTGGAAAGCTTTGTAAAGTTGGGATCATAAGTGGCCATCAAGGGCCAGTGAAGTGTTTGCAAGCCTCACCCAATAGAATTGGCGGTGGCTTTTTGCTTTACAGTGGGAGCCTTGACAGAAGTGTGAGAGTATGGTGGGTTCCAAGGTATACAGAAGAAGTGGAGGACAACTCTGCGAAGTGCAAACTGAAAGAATCCTTCACCCCCATGTTAGGAACATGTTGA 1242 0.463 MNPMNTLVSKSKIFSPPSSYTTSGSISSSDSDESPICSQRMSLLSLPLPCNACTCHRQLAILSGHVGSVSCLALCGEFILSASQGKDIIVWQQPDLRVFAKFGHGDGSVKALVTVGNKVFTAHQDSRIRVWKVSRSSENVFKLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVCNGLIYSGSWDKTLKVWNLSDLKCLESIKAHDDAINGLVASKGIVYSASADGKIKAWGRKEEKKGLHCLKGVLEGHKDVSFNSVIVSDDGKWVYGGGSDGFVIGWEGCGNFENWKMVSETKAHEMAVLCMCLMGDFLCSGSADKSIGIWKREAFGKLCKVGIISGHQGPVKCLQASPNRIGGGFLLYSGSLDRSVRVWWVPRYTEEVEDNSAKCKLKESFTPMLGTC* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0145 413 Gene3D - 51 157 IPR015943 GO:0005515
Lja3g0145 413 CDD WD40 59 384 - -
Lja3g0145 413 SMART WD40_4 342 385 IPR001680 GO:0005515
Lja3g0145 413 SMART WD40_4 95 132 IPR001680 GO:0005515
Lja3g0145 413 SMART WD40_4 167 204 IPR001680 GO:0005515
Lja3g0145 413 SMART WD40_4 252 292 IPR001680 GO:0005515
Lja3g0145 413 SMART WD40_4 207 244 IPR001680 GO:0005515
Lja3g0145 413 SMART WD40_4 55 92 IPR001680 GO:0005515
Lja3g0145 413 SMART WD40_4 299 336 IPR001680 GO:0005515
Lja3g0145 413 ProSiteProfiles Trp-Asp (WD) repeats profile. 349 384 IPR001680 GO:0005515
Lja3g0145 413 SUPERFAMILY WD40 repeat-like 59 389 IPR036322 GO:0005515
Lja3g0145 413 Gene3D - 158 406 IPR015943 GO:0005515
Lja3g0145 413 ProSiteProfiles Trp-Asp (WD) repeats profile. 174 213 IPR001680 GO:0005515
Lja3g0145 413 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 9 399 IPR045182 -
Lja3g0145 413 ProSitePatterns Trp-Asp (WD) repeats signature. 191 205 IPR019775 -
Lja3g0145 413 Pfam WD domain, G-beta repeat 257 289 IPR001680 GO:0005515
Lja3g0145 413 Pfam WD domain, G-beta repeat 346 384 IPR001680 GO:0005515
Lja3g0145 413 Pfam WD domain, G-beta repeat 176 204 IPR001680 GO:0005515
Lja3g0145 413 PANTHER OS01G0946100 PROTEIN 9 399 - -
Lja3g0145 413 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 349 384 - -
Lja3g0145 413 PRINTS G protein beta WD-40 repeat signature 372 386 IPR020472 -
Lja3g0145 413 PRINTS G protein beta WD-40 repeat signature 323 337 IPR020472 -
Lja3g0145 413 PRINTS G protein beta WD-40 repeat signature 191 205 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0145 Lja-Chr3 1537642 1539083 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0145 164 384 Miscellaneous Gene Families AT5G08390 25.322 1.86e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0145 - - gmx:100775295 653.669