Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0144 ATGAGTGATTCTAAGATGTTTCTATTTGGGTCATTTACTGAAGATGAAACCAAATCATTGTTGGTAAAGAAGTCTTCTGGTAAAAATGAAAAGCACGCGGAGAAGAAGCACCCGCTCCAATTCGGTTCTCTGAATTCTGTTACTGTTGAGTCAAACAACCTGTTAAATTCATCAAATGCTCCCGATAGTGTTCCTCCTGCTGATTCTCTGAAATGTAATGGGGTGGCTATCACTGGTAACTTTCCTAAAGTATCAGGAAGTATAAAAGAGAAAAAAGAGAATGGCAGCATTACCAATTTCTCCCTTAGCCCTTCAAGTGTGATTAGTGCAAACCAAGTTAAAAAAAATAATGTGCATTCTGTTAAACCACTTGATGAAGATGGTCCCTCAAACCAATTTACAAATTTGAGCCTCTATGCTTCTGAGGATGAAAGCTTGAATGCTCATAAAATTGCCAGTGAGGATGATTCTTTATCTAAACTATCTGATCAAGACTCGAAAAAGGCACCTAATTGCCATGCTGTTGTTCATGTTAAGGATCTACTGCCTCGAGGCCTTATCAACTCTGGGAATCTATGCTTTCTTAATGCAACCATGCAAGCCCTATTGTCTTGTTCTCCTTTTGTTCAGCTTTTGCAGGAATTAAGAACTCGTAACATTCCAAAGGTTGGCTATCCCACATTGACAGCATTTGCTGAGTTTTTAACTCAATTTGACATGCCAAGCGGAACACAATTGAAGAAGAAAGATTCTGATTCATTTGAGTTTGGAAAGCCATTTTGCCCTGTTATGTTTGAAGGTGTTCTGAAAAATTTTACTCCCGATGTGCCAAATAGCATTTCAGGAAGACCAAGGCAGGAAGATGCTCAGGAATTTCTGAGCTTTGTAATGGATCAAATGCATGATGAACTACTGAAGTTTGAAGGTCAGTCTTCAAGTCTTAATGGTAGCAGATCTTCCCTAGTTTCTTCTGTGGAGGATGATGAATGGGAAACAGTGGGGCCAAAGAATAAATCTGCTGTAACAAGGACTCAAAGTTTTGTTCCATCAGAGTTAAGTGGTATTTTTGGAGGGGACCTCAGAAGTTTGGTGACAACTAAAGGTAATAGAGGTTCTGCCACTATTCAACCATATCTCTTACTCCATCTTGACATTTATCCTGATGCTGTCCACACTATTGAGGATGCTCTTCACTTGTTTTCTGCACCGGAAACTGTTGAAGGGTACCGAACATCAGTGACTGGGAAGCCAGGTGTTGTGACTGCAAAAAAATCTGTGCAGATACAGACACTTCCACGGATTATGATATTGCACTTGATGCGTTTTGGTTATGGAAGCCAGGGAAGCACCAAGTTACATAAGCCTGTGCACTTTCCTCTTGAGTTGACTTTGCGTCGTGAGTTGCTTTTTTCTGCATCTACCGAGGGTCGAAAATATGAACTTGTTGCAACAATTACTCATCACGGAAGGGAGCCTTCAAAAGGGCACTACACAGCTGATGCCCAGTACCCTAATGGTCTCTGGCTACGATTTGATGATGCATCTGTCTATTCTATTGGAGTAAATAAGGTGCTCCATGACCAGGCATATGTTCTGTTCTACAAACAGATATGA 1614 0.4064 MSDSKMFLFGSFTEDETKSLLVKKSSGKNEKHAEKKHPLQFGSLNSVTVESNNLLNSSNAPDSVPPADSLKCNGVAITGNFPKVSGSIKEKKENGSITNFSLSPSSVISANQVKKNNVHSVKPLDEDGPSNQFTNLSLYASEDESLNAHKIASEDDSLSKLSDQDSKKAPNCHAVVHVKDLLPRGLINSGNLCFLNATMQALLSCSPFVQLLQELRTRNIPKVGYPTLTAFAEFLTQFDMPSGTQLKKKDSDSFEFGKPFCPVMFEGVLKNFTPDVPNSISGRPRQEDAQEFLSFVMDQMHDELLKFEGQSSSLNGSRSSLVSSVEDDEWETVGPKNKSAVTRTQSFVPSELSGIFGGDLRSLVTTKGNRGSATIQPYLLLHLDIYPDAVHTIEDALHLFSAPETVEGYRTSVTGKPGVVTAKKSVQIQTLPRIMILHLMRFGYGSQGSTKLHKPVHFPLELTLRRELLFSASTEGRKYELVATITHHGREPSKGHYTADAQYPNGLWLRFDDASVYSIGVNKVLHDQAYVLFYKQI* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0144 537 Pfam Ubiquitin carboxyl-terminal hydrolase 185 534 IPR001394 GO:0004843|GO:0016579
Lja3g0144 537 MobiDBLite consensus disorder prediction 23 43 - -
Lja3g0144 537 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 479 497 IPR018200 GO:0004843|GO:0006511
Lja3g0144 537 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 2 537 - -
Lja3g0144 537 MobiDBLite consensus disorder prediction 23 38 - -
Lja3g0144 537 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 2 537 - -
Lja3g0144 537 Gene3D Cysteine proteinases 170 536 - -
Lja3g0144 537 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 185 200 IPR018200 GO:0004843|GO:0006511
Lja3g0144 537 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 184 537 IPR028889 -
Lja3g0144 537 SUPERFAMILY Cysteine proteinases 183 536 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0144 Lja-Chr3 1530963 1536236 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0144 181 537 Miscellaneous Gene Families AT2G24640 28.689 6.94e-23 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0144 K11841 - gmx:100799656 808.52