Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0142 ATGAGATACCATTACCAACCATTTAGTCTTGTTGGGGAACACAACATTATGTTCCTCAGAAGCTTCATCATCTTGTTTCTTAGTTGCATAGTCATTAGGCTTAGCTTGTGTCTTTCAAGTATCCCTTCCACACTAAAAACACTTCCCCTTAATTTAAATTTTGATGAAGCTAGCCTAAGGCATGCAGCCAGGGACTTTGGTAACAGGTACCAACACCATCCAATGGCAGTGCTGCATCCAGAATCAGTTCCTGATATAGCTGCCACCATAAAGCATATCTGGCTCATGGGACCTAGCTCTCATCTCACTGTTGCAGCCAGAGGCCATGGCCACTCACTGCAGGGCCAGGCACAAGCTCATGGAGGAATAGTGATCAACATGGAATCACTCAAGGTTAAAGAAATGCAGGTATATGGAGGAAATTCTCCATATGTGGATGTCTCAGGTGGGGAACTGTGGATAAACATCCTGCATGAGACTCTGAGATACGGTTATGCACCAAGATCATGGACAGATTACCTTCATCTTACAGTTGGTGGCACTCTCTCCAATGCTGGTGTTAGTGGTCAGGCATTTAAGCACGGTCCCCAGATAAGCAATGTTCAGCAGCTGGAGATTGTTACAGGAACAGGGGAGGTGGTAAACTGTTCTAAGGAGCATAATGGGGAACTCTTTCACAGTGCTCTTGGGGGGCTCGGTCAGTTTGGCATTATAACCAGGGCAAGAATTCTCCTAGAACCAGCACCTACCAAGGTAAAGTGGATTAGAGTGCTATACTCAGACTTCTCAGCTTTCACAAGAGACCAAGAGCAATTAATATCTGCAGAAAATGCATTTGATTACATTGAAGGATTTGTGATAATAAACAGAACTGGTCTGCTAAATAACTGGAGATCCTCCTTCAATCCACAAGACCCAGTTCAAGCTAGTCATTTCAAGTCAGAGGGAAGAACACTCTACTGCCTAGAATTGGCCAAATACTTCAGCTTGGAAGAAATAGATGTAGTAAATCAGGAAGTTGAGAGAGACCTGTCCTATTTAAGCTATATCCCATCAACCCTTTTTCTAACAGAAGTCACATATGTAGATTTCTTAGACAGGGTGCATGTATCCGAGGTCAAATTGCGTTCAAAAGGCTTGTGGGATGTTCCACACCCATGGCTCAATCTCTTTATACCAAAAAGCAAAATACACAGTTTCGCACAAGTCGTATTCGGGAACATCCTCAAAGAAACAAGCAATGGTCCTGTCCTTATCTACCCAGTAAACAAATCAAAGTGGGACAACAGAACTTCTGTTGCTATTCCAGATGAAGATATTTTCTACCTAGTGGCATTTCTTACCTCTGCTGTCCCTTCTTCCAATGGAACTGATGGTCTAGAATATATACTAAGTCAGAATAAAAGGATTTTAGAATACTGTGAAAGAGCACAACTTGGAGCAAAGCAATATTTACCCCACCACAGTACACAGGAAGAATGGAGGGACCATTTTGGTTCCAAGTGGGAAGCATTTCTGAAAAGAAAATCTCTTTATGACCCACTAGCAATACTTGCTCCTGGCCAAGGAATATTTCAAAAAACAGTATCTTTCTCATGA 1599 0.4246 MRYHYQPFSLVGEHNIMFLRSFIILFLSCIVIRLSLCLSSIPSTLKTLPLNLNFDEASLRHAARDFGNRYQHHPMAVLHPESVPDIAATIKHIWLMGPSSHLTVAARGHGHSLQGQAQAHGGIVINMESLKVKEMQVYGGNSPYVDVSGGELWINILHETLRYGYAPRSWTDYLHLTVGGTLSNAGVSGQAFKHGPQISNVQQLEIVTGTGEVVNCSKEHNGELFHSALGGLGQFGIITRARILLEPAPTKVKWIRVLYSDFSAFTRDQEQLISAENAFDYIEGFVIINRTGLLNNWRSSFNPQDPVQASHFKSEGRTLYCLELAKYFSLEEIDVVNQEVERDLSYLSYIPSTLFLTEVTYVDFLDRVHVSEVKLRSKGLWDVPHPWLNLFIPKSKIHSFAQVVFGNILKETSNGPVLIYPVNKSKWDNRTSVAIPDEDIFYLVAFLTSAVPSSNGTDGLEYILSQNKRILEYCERAQLGAKQYLPHHSTQEEWRDHFGSKWEAFLKRKSLYDPLAILAPGQGIFQKTVSFS* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0142 532 Gene3D - 251 484 IPR016170 -
Lja3g0142 532 Pfam FAD binding domain 74 217 IPR006094 GO:0050660
Lja3g0142 532 PANTHER CYTOKININ OXIDASE/DEHYDROGENASE-LIKE PROTEIN 11 529 - -
Lja3g0142 532 SUPERFAMILY FAD-binding/transporter-associated domain-like 51 247 IPR036318 GO:0050660
Lja3g0142 532 ProSiteProfiles PCMH-type FAD-binding domain profile. 70 248 IPR016166 GO:0071949
Lja3g0142 532 Gene3D - 127 250 IPR016169 -
Lja3g0142 532 Gene3D - 60 525 IPR016167 -
Lja3g0142 532 PANTHER GULONOLACTONE OXIDASE 11 529 - -
Lja3g0142 532 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 249 525 IPR015345 GO:0009690|GO:0019139|GO:0050660
Lja3g0142 532 ProSitePatterns Oxygen oxidoreductases covalent FAD-binding site. 74 109 IPR006093 GO:0016491
Lja3g0142 532 SUPERFAMILY FAD-linked oxidases, C-terminal domain 249 525 IPR016164 GO:0003824|GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0142 Lja-Chr3 1484446 1487088 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0142 K00279 - gmx:100808619 931.013