Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0140 ATGGATTCTTACGAAGCTACTAGGATTGTGTTTTCAAGGATCCAAAACTTGGACCCTGAAAACGCTGCCAAAATCATGGGGGTGCTTCTGCTTCAAGACCATGGTGAGAAGGAGATGATAAGATTAGCATTTGGTCCTGAAGCTCTTCTTCACTCTGTGATTATCAAAGCCAGAAAGGAGTTAGGATTTCCCTCGAACTCTCCGCCAACACCTTCAACTCCTCCATCTCCTTCTCCTTTCCTTTCAAGGCAAAGTAGTTCCACTTCTTCTTCAAGGTTCAGTGGGATCAACCTTCCTCCATCTCTCACTATCCCAAACCCTTCTTGGTCTTCTTCAATGTCAGAGCTTCATAACCCAGAGGATTTGATGAGTCCATCATCTTCCTTACCTTTCTACCCAAATGGAAGTTCAGATCCAGTAGTGGATGATTTTCAGCTTCAAGACCAGCTTTCTTTCTTGAATGATGGTTCTCCTACTCTTGCTCACAAAAACAACAATCCTGATTTGTTCTACTCTCACTCTGACTTGTCTTCAAGTCCCACAGACTCTGGTCTCTTTCCTTCCTATGGCTGGGGAGGGTCTCTTCACAGGAGGAGTTGTTCTGTCAATGATGCTTGTTTGGGTTCTGAGGACCCAAATTCAGGGTTGGGGTGGAAGCCTTGCCTTTACTTTGCAAGAGGGTACTGTAAAAATGGTACTAGTTGCAGGTTCCTTCATGGAGGACTTGGTGATGGTGATGGTGCTGCAATTGTTGGGTCTCCCAGCAAGATTGAGATGATGGACCAGTGCCATGAGCTACTCAGATCTAAATCTGTTCAGCAACAAAGATTGGCTGCTGCTACTTCTCAGCTCATGGCTTCTTCCACTTTCCCTTACTCATCTAAGTGCATGAATTTGCTTTTGCAGCAGCAACAGAATGACACTCAAAGGGCAGCAGCTGCAGCTCTTATGATGAGTGAGGATTTGCACAAGTTTGGAAGATCCAGGCTTGAAAGAAATGATTTCTCTTTGAACAGTCCTGGGATGGTTAACCCAGCTTCTAGACAGATCTACTTGACCTTCCCAGCTGATAGCACTTTCAGAGAAGAAGATGTTTCGAATTACTTCAGCATTTTTGGACCTGTTCAAGATGTGAGGATCCCATACCAGCAGAAGCGCATGTTTGGTTTTGTTACCTTTGTTTATGCTGAGACTGTTAAGCTCATTCTATCCAAAGGAAACCCTCATTTTGTGTGTGATGCTAGAGTGCTAGTTAAGCCTTACAAGGAGAAGGGCAAAGTCCCAGACAGGAAGCAACAGCAGCAGGTAGATAGGGAATTTTCACCTCGTGGTACTCCTACAGGACTAGATGCTAGAGAACAGTATGATCTTAACCTTGGAGGTAGAATGTTCTACAATACTCAAGACATGCTGTGGAGGAGGAAGTTAGAAGAGCAAGCTGATCTGCAGCAAGCTCTTGAGCTCCAAAGTAGGAGGTTAATGGGGCTGCAACTTCTCGACATCAAGAAGCAACACCAACGTGCTTTTTCCTCTGGAAGTCCAATTCCTTCCCCAACCCACTCTCCTAATATGTTCAACCAAAATCTTGTTCTTCCTTCATTCCACCGAAGCTCAGACGCCTCAGATGAGAATGGTTCAAGTTCTGCTCCTGCTAGTACTGTATGTGCTTCTGTTGGTCAGCAAATTTCAGTTGGCAGAGAAGAAGTTGTTGTCAATGGGGAGAATGGAGATAGTGAAGGCAGTAGCAAGCAGAGCTCAAGTCATGAAGAATTTGATTTGCAAGAATGTTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCCACAAAAGCTGGTGGAGACTTTGTGGCTCCATTCTCCAATGGACCTATTGAGGCCATTTGTTCAGATGCCTCAGCTACATCTGCCAACTCTAAATCTGGTACCAGCACATTACTTCCACCATCAGCATCTGCTCTTGATATGGGGTCTTTTAAATCCTTTAACTGCCAATTACCAAGGTTCTCTTCCGGCCATGGAACTATTGGGATGTTTGCCGGCACCGGTGGGCCGATTGGCATTTAG 2067 0.4514 MDSYEATRIVFSRIQNLDPENAAKIMGVLLLQDHGEKEMIRLAFGPEALLHSVIIKARKELGFPSNSPPTPSTPPSPSPFLSRQSSSTSSSRFSGINLPPSLTIPNPSWSSSMSELHNPEDLMSPSSSLPFYPNGSSDPVVDDFQLQDQLSFLNDGSPTLAHKNNNPDLFYSHSDLSSSPTDSGLFPSYGWGGSLHRRSCSVNDACLGSEDPNSGLGWKPCLYFARGYCKNGTSCRFLHGGLGDGDGAAIVGSPSKIEMMDQCHELLRSKSVQQQRLAAATSQLMASSTFPYSSKCMNLLLQQQQNDTQRAAAAALMMSEDLHKFGRSRLERNDFSLNSPGMVNPASRQIYLTFPADSTFREEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYAETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDRKQQQQVDREFSPRGTPTGLDAREQYDLNLGGRMFYNTQDMLWRRKLEEQADLQQALELQSRRLMGLQLLDIKKQHQRAFSSGSPIPSPTHSPNMFNQNLVLPSFHRSSDASDENGSSSAPASTVCASVGQQISVGREEVVVNGENGDSEGSSKQSSSHEEFDLQECLEHNLPDSPFASPTKAGGDFVAPFSNGPIEAICSDASATSANSKSGTSTLLPPSASALDMGSFKSFNCQLPRFSSGHGTIGMFAGTGGPIGI* 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0140 688 MobiDBLite consensus disorder prediction 62 131 - -
Lja3g0140 688 CDD RRM_AtC3H46_like 350 419 IPR034365 -
Lja3g0140 688 SMART c3hfinal6 217 241 IPR000571 GO:0046872
Lja3g0140 688 MobiDBLite consensus disorder prediction 535 554 - -
Lja3g0140 688 MobiDBLite consensus disorder prediction 79 131 - -
Lja3g0140 688 MobiDBLite consensus disorder prediction 424 451 - -
Lja3g0140 688 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 676 - -
Lja3g0140 688 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN-RELATED 1 676 - -
Lja3g0140 688 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 220 240 IPR000571 GO:0046872
Lja3g0140 688 Gene3D - 346 448 IPR012677 -
Lja3g0140 688 Gene3D - 209 279 - -
Lja3g0140 688 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 348 424 IPR000504 GO:0003723
Lja3g0140 688 SUPERFAMILY CCCH zinc finger 218 240 IPR036855 GO:0046872
Lja3g0140 688 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 360 404 IPR000504 GO:0003723
Lja3g0140 688 MobiDBLite consensus disorder prediction 572 592 - -
Lja3g0140 688 ProSiteProfiles Zinc finger C3H1-type profile. 215 242 IPR000571 GO:0046872
Lja3g0140 688 SUPERFAMILY RNA-binding domain, RBD 360 441 IPR035979 GO:0003676
Lja3g0140 688 MobiDBLite consensus disorder prediction 508 527 - -
Lja3g0140 688 SMART rrm1_1 349 419 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0140 Lja-Chr3 1470744 1477886 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0140 - - gmx:100801341 1050.04