Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0139 ATGGATTCTTACGAAGCTACTAGGATTGTGTTTTCAAGGATCCAAAACTTGGACCCTGAAAACGCTGCCAAAATCATGGGGGTGCTTCTGCTTCAAGACCATGGTGAGAAGGAGATGATAAGATTAGCATTTGGTCCTGAAGCTCTTCTTCACTCTGTGATTATCAAAGCCAGAAAGGAGTTAGGATTTCCCTCGAACTCTCCGCCAACACCTTCAACTCCTCCATCTCCTTCTCCTTTCCTTTCAAGGCAAAGTAGTTCCACTTCTTCTTCAAGGTTCAGTGGGATCAACCTTCCTCCATCTCTCACTATCCCAAACCCTTCTTGGTCTTCTTCAATGTCAGAGCTTCATAACCCAGAGGATTTGATGAGTCCATCATCTTCCTTACCTTTCTACCCAAATGGAAGTTCAGATCCAGTAGTGGATGATTTTCAGCTTCAAGACCAGCTTTCTTTCTTGAATGATGGTTCTCCTACTCTTGCTCACAAAAACAACAATCCTGATTTGTTCTACTCTCACTCTGACTTGTCTTCAAGTCCCACAGACTCTGGTCTCTTTCCTTCCTATGGCTGGGGAGGGTCTCTTCACAGGAGGAGTTGTTCTGTCAATGATGCTTGTTTGGGTTCTGAGGACCCAAATTCAGGGTTGGGGTGGAAGCCTTGCCTTTACTTTGCAAGAGGGTACTGTAAAAATGGTACTAGTTGCAGGTTCCTTCATGGAGGACTTGGTGATGGTGATGGTGCTGCAATTGTTGGGTCTCCCAGCAAGATTGAGATGATGGACCAGTGCCATGAGCTACTCAGATCTAAATCTGTTCAGCAACAAAGATTGGCTGCTGCTACTTCTCAGCTCATGGCTTCTTCCACTTTCCCTTACTCATCTAAGTGCATGAATTTGCTTTTGCAGCAGCAACAGAATGACACTCAAAGGGCAGCAGCTGCAGCTCTTATGATGAGTGAGGATTTGCACAAGTTTGGAAGATCCAGGCTTGAAAGAAATGATTTCTCTTTGAACAGTCCTGGGATGGTTAACCCAGCTTCTAGACAGATCTACTTGACCTTCCCAGCTGATAGCACTTTCAGAGAAGAAGATGTTTCGAATTACTTCAGCATTTTTGGACCTGTTCAAGATGTGAGGATCCCATACCAGCAGAAGCGCATGTTTGGTTTTGTTACCTTTGTTTATGCTGAGACTGTTAAGCTCATTCTATCCAAAGGAAACCCTCATTTTGTGTGTGATGCTAGAGTGCTAGTTAAGCCTTACAAGGAGAAGGGCAAAGTCCCAGACAGGAAGCAACAGCAACAGGTAGATAGAGATTTTTCACCTTGTGGTACTCCTACAGGACTAGATGCTAGAGAACAATATGATCTTAACCTTGGAGGTAGAATGTTCTACAATACTCAAGACATACTGTGGAGGAGGAAGTTGGAGGAGCAAGCTGATCTGCAACAAGCTCTTGAGCTCCAAAGTAGGAGGTTAATGGGGCTGCAACTTCTTGACATCAAGAAGCAACACCAACGTGCTTTTTCCACTGGAAGTCCAATTCCTTCCCCAACCCACTCTCCTAACATGTTTAACCAAAATCTTGTTCTTCCTTCATTTCACAGAAGCTCAGAGGCCTCAGAGGAGAATGGTTCATGTTCTGCTTCAGCTAGTACTGTGTCTGCTTCTGCTGGTCAGCAAGTTTCTGCTGGCAAGGAAGAAGTCGTTGTCAATGTGGAGAATGGAGATAGTGAAGGCAGTGGCAAGCAGAGCTCAAGTCATGAAGACTGTGATTTGCAAGAATGTTCGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCCACGAAAGCTGGTGCAGACTTTGTGGCTCCATTTTCCAATGGACCTAATGAGGCCATTGATTCTGATGCATCTGGCAGCTCTAAATTTGGTACCAGCACATTACTTCCACCAGCAGCATCTGCTCTGGACATGGGGTCTTACAAATCCTTCAACTGCCAATTACCAAGGTTCTCTTCTGGTCACGGAACTATTGGGATGTTTGCGGGTACTGGCGGACCGATTGGCATTTAG 2058 0.4524 MDSYEATRIVFSRIQNLDPENAAKIMGVLLLQDHGEKEMIRLAFGPEALLHSVIIKARKELGFPSNSPPTPSTPPSPSPFLSRQSSSTSSSRFSGINLPPSLTIPNPSWSSSMSELHNPEDLMSPSSSLPFYPNGSSDPVVDDFQLQDQLSFLNDGSPTLAHKNNNPDLFYSHSDLSSSPTDSGLFPSYGWGGSLHRRSCSVNDACLGSEDPNSGLGWKPCLYFARGYCKNGTSCRFLHGGLGDGDGAAIVGSPSKIEMMDQCHELLRSKSVQQQRLAAATSQLMASSTFPYSSKCMNLLLQQQQNDTQRAAAAALMMSEDLHKFGRSRLERNDFSLNSPGMVNPASRQIYLTFPADSTFREEDVSNYFSIFGPVQDVRIPYQQKRMFGFVTFVYAETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDRKQQQQVDRDFSPCGTPTGLDAREQYDLNLGGRMFYNTQDILWRRKLEEQADLQQALELQSRRLMGLQLLDIKKQHQRAFSTGSPIPSPTHSPNMFNQNLVLPSFHRSSEASEENGSCSASASTVSASAGQQVSAGKEEVVVNVENGDSEGSGKQSSSHEDCDLQECSEHNLPDSPFASPTKAGADFVAPFSNGPNEAIDSDASGSSKFGTSTLLPPAASALDMGSYKSFNCQLPRFSSGHGTIGMFAGTGGPIGI* 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0139 685 MobiDBLite consensus disorder prediction 62 131 - -
Lja3g0139 685 CDD RRM_AtC3H46_like 350 419 IPR034365 -
Lja3g0139 685 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 220 240 IPR000571 GO:0046872
Lja3g0139 685 SMART c3hfinal6 217 241 IPR000571 GO:0046872
Lja3g0139 685 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN-RELATED 1 673 - -
Lja3g0139 685 MobiDBLite consensus disorder prediction 79 131 - -
Lja3g0139 685 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 360 404 IPR000504 GO:0003723
Lja3g0139 685 Gene3D - 209 279 - -
Lja3g0139 685 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 673 - -
Lja3g0139 685 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 348 424 IPR000504 GO:0003723
Lja3g0139 685 Gene3D - 293 440 IPR012677 -
Lja3g0139 685 ProSiteProfiles Zinc finger C3H1-type profile. 215 242 IPR000571 GO:0046872
Lja3g0139 685 SUPERFAMILY CCCH zinc finger 218 240 IPR036855 GO:0046872
Lja3g0139 685 SUPERFAMILY RNA-binding domain, RBD 360 439 IPR035979 GO:0003676
Lja3g0139 685 MobiDBLite consensus disorder prediction 575 636 - -
Lja3g0139 685 MobiDBLite consensus disorder prediction 583 597 - -
Lja3g0139 685 SMART rrm1_1 349 419 IPR000504 GO:0003723
Lja3g0139 685 MobiDBLite consensus disorder prediction 425 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0139 Lja-Chr3 1461067 1463926 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0139 - - gmx:100801341 1049.27